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The map label for this gene is ybdO [H]

Identifier: 238925987

GI number: 238925987

Start: 3396233

End: 3397270

Strand: Reverse

Name: ybdO [H]

Synonym: EUBREC_3645

Alternate gene names: 238925987

Gene position: 3397270-3396233 (Counterclockwise)

Preceding gene: 238925988

Following gene: 238925986

Centisome position: 98.48

GC content: 35.74

Gene sequence:

>1038_bases
ATGGTTACTGTAAATAATTCTGACTATTATAATAACATTCCAGCTGGCAGGGATTTAAACAACCTGCCCAATAATTCCAA
CACTGGTACAACTGTAGGTTATCAATATGATGGACTTACCGAGGAAGATCGTTTCGTACAAAAAGTTTTGCAGGAGCATT
ATGATAAAGTGTACAAAGAAAATTTGTCTCATTCTGATCCGATGACATATATCGAATCAAAATATTGTGATGTGACCTCA
CCTAATTTTTGCTCATATATGACAGAAGATCAGCGTTCCATAGCTTACCGCAATGAGAAAAGAATGTTACAAACAGGAGG
AAAATATTCGGCTGGATTTGCCCGGTATGATTATGCATTAAGAAATTACAAGGATGTATATACAGGAGGTTCAAGAAGTG
TTGGTTATGTACGCAATACTGACAGGGAAAAACAGTATGCCAGAAGTGTTGTAAATCAGCAAATTTCAAATCTACTTTCA
AAGAATGGGATATCAATATCAAAACAGGCAGATTTGGTATTTTCTATTGATCCATATACATATCAATTAACAGTGTCGGG
AAATGCAGATAGAGACATATTATCGCAGATAGAAAAATTACTGAATGAAGGGGATAATGCGAAAAATATATGGACACATG
CGTGGATTTGTATGCATGATGCAGACAATGAAATTGTTAATTCGCAGGCAAATATGACAAAGGCAAACCAATATTCTTTA
TGGCATGAAGTCTATGAGACAACAGGGTATGATGCACGCAATGCGACATATAGAAATGGTACTTTTATTGCAGAGGATGG
CACAGATTTACTTGTCTTGTTTAAGGAAAAGGCTAAAAATGGCGCAGGGTATGAACTTTATTCTAATAGATGGTTGGAAT
ATGCTAAGAATGGATGGAAAAAAGAAAATGATTTAGTATTGAAAATAGGCTTTGACAGCAGTGGGTTGTATGATATAGGG
CAGGAAAGAGGGTATGGAGCAACGCAGAATATGTGGATAAAAGGTATTAGTCAAAGTATATTTGAAGCTAGCGTGTAA

Upstream 100 bases:

>100_bases
GGATAATGAAGAAAAAATGTGGAAAATAAAATGAAAAAAGTTTATCGATAGGGTTTCAGTATGATTCACATGATACAGAT
TATAAGGTAGGTGGTATAGT

Downstream 100 bases:

>100_bases
TCAATATTATATTGATTCTGAGAGAAATCCAACAGGTGGCATAGTTGGAAGGACTCCGAATAATGAAAGGAGATATGTTA
ATATGGCAGTTACAGGAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MVTVNNSDYYNNIPAGRDLNNLPNNSNTGTTVGYQYDGLTEEDRFVQKVLQEHYDKVYKENLSHSDPMTYIESKYCDVTS
PNFCSYMTEDQRSIAYRNEKRMLQTGGKYSAGFARYDYALRNYKDVYTGGSRSVGYVRNTDREKQYARSVVNQQISNLLS
KNGISISKQADLVFSIDPYTYQLTVSGNADRDILSQIEKLLNEGDNAKNIWTHAWICMHDADNEIVNSQANMTKANQYSL
WHEVYETTGYDARNATYRNGTFIAEDGTDLLVLFKEKAKNGAGYELYSNRWLEYAKNGWKKENDLVLKIGFDSSGLYDIG
QERGYGATQNMWIKGISQSIFEASV

Sequences:

>Translated_345_residues
MVTVNNSDYYNNIPAGRDLNNLPNNSNTGTTVGYQYDGLTEEDRFVQKVLQEHYDKVYKENLSHSDPMTYIESKYCDVTS
PNFCSYMTEDQRSIAYRNEKRMLQTGGKYSAGFARYDYALRNYKDVYTGGSRSVGYVRNTDREKQYARSVVNQQISNLLS
KNGISISKQADLVFSIDPYTYQLTVSGNADRDILSQIEKLLNEGDNAKNIWTHAWICMHDADNEIVNSQANMTKANQYSL
WHEVYETTGYDARNATYRNGTFIAEDGTDLLVLFKEKAKNGAGYELYSNRWLEYAKNGWKKENDLVLKIGFDSSGLYDIG
QERGYGATQNMWIKGISQSIFEASV
>Mature_345_residues
MVTVNNSDYYNNIPAGRDLNNLPNNSNTGTTVGYQYDGLTEEDRFVQKVLQEHYDKVYKENLSHSDPMTYIESKYCDVTS
PNFCSYMTEDQRSIAYRNEKRMLQTGGKYSAGFARYDYALRNYKDVYTGGSRSVGYVRNTDREKQYARSVVNQQISNLLS
KNGISISKQADLVFSIDPYTYQLTVSGNADRDILSQIEKLLNEGDNAKNIWTHAWICMHDADNEIVNSQANMTKANQYSL
WHEVYETTGYDARNATYRNGTFIAEDGTDLLVLFKEKAKNGAGYELYSNRWLEYAKNGWKKENDLVLKIGFDSSGLYDIG
QERGYGATQNMWIKGISQSIFEASV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39434; Mature: 39434

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTVNNSDYYNNIPAGRDLNNLPNNSNTGTTVGYQYDGLTEEDRFVQKVLQEHYDKVYKE
CEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
NLSHSDPMTYIESKYCDVTSPNFCSYMTEDQRSIAYRNEKRMLQTGGKYSAGFARYDYAL
CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RNYKDVYTGGSRSVGYVRNTDREKQYARSVVNQQISNLLSKNGISISKQADLVFSIDPYT
HCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEECCEE
YQLTVSGNADRDILSQIEKLLNEGDNAKNIWTHAWICMHDADNEIVNSQANMTKANQYSL
EEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHCCCCCCCCCHHHHH
WHEVYETTGYDARNATYRNGTFIAEDGTDLLVLFKEKAKNGAGYELYSNRWLEYAKNGWK
HHHHHHHCCCCCCCCEECCCEEEEECCCCEEEEEEECCCCCCCEEHHHHHHHHHHHCCCC
KENDLVLKIGFDSSGLYDIGQERGYGATQNMWIKGISQSIFEASV
CCCCEEEEEECCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVTVNNSDYYNNIPAGRDLNNLPNNSNTGTTVGYQYDGLTEEDRFVQKVLQEHYDKVYKE
CEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
NLSHSDPMTYIESKYCDVTSPNFCSYMTEDQRSIAYRNEKRMLQTGGKYSAGFARYDYAL
CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RNYKDVYTGGSRSVGYVRNTDREKQYARSVVNQQISNLLSKNGISISKQADLVFSIDPYT
HCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEECCEE
YQLTVSGNADRDILSQIEKLLNEGDNAKNIWTHAWICMHDADNEIVNSQANMTKANQYSL
EEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHCCCCCCCCCHHHHH
WHEVYETTGYDARNATYRNGTFIAEDGTDLLVLFKEKAKNGAGYELYSNRWLEYAKNGWK
HHHHHHHCCCCCCCCEECCCEEEEECCCCEEEEEEECCCCCCCEEHHHHHHHHHHHCCCC
KENDLVLKIGFDSSGLYDIGQERGYGATQNMWIKGISQSIFEASV
CCCCEEEEEECCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]