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The map label for this gene is ydeC [H]

Identifier: 238925960

GI number: 238925960

Start: 3380839

End: 3381750

Strand: Direct

Name: ydeC [H]

Synonym: EUBREC_3618

Alternate gene names: 238925960

Gene position: 3380839-3381750 (Clockwise)

Preceding gene: 238925959

Following gene: 238925961

Centisome position: 98.0

GC content: 39.58

Gene sequence:

>912_bases
ATGAAAAATATCCATAGCATTGAATTTTATACCGGAAGCAAGGAAGAATTGCTTCCAGATTTTGAAAAAGATTTTCCCTA
TATCGCTTCGAGGGCAGAACTTGACAAGTATATAGGGGGTTATGTACCGTGGCACTGGCACAGGACAGTGGAACTTTTTT
ATATGGAAAGCGGCAGCATTGAATATGATACGCCAGGAGGAAAAATATTGTTTCCGGCTGGAAGCGGCGGCATGATAAAT
CCCAATGTACTCCATATGACAAAAGCAATATCGCAGAGAGAAAAGAATATACAGCTACTTCATATTTTCGATGTTTCCTT
ACTTGCCGGAGAACAGGGAAGCAGGATTGAACAAAAATATATTGCGCCTGTCATAACAGCCCCGCAGATTGAGGTAATCC
CGCTTTTTCCGGGCAATGCAGAAGAAGAAAGAATTTTGAAATTGCTTGCTGCCTCATTTCGTTTATCCAGTGATGAATTT
GGATATGAAATAAAACTGCGGGAAGCCCTAACTGAAATATGGCTCATGCTTTTTGAACTATCTTGCTCTATGCGTGAAAA
GAAGGGGGAACATAACAAAAGCAACGATAAAATAAAGTTGATGATGATATACATTCATGAACATTACAGAGAAAAAATAT
CTATTCTGGAACTTGCTGCGGCAGCATATCTAAGCGAAAGGGAGTGTTATAGAGTGTTCCATGACTGTCTACACATGACA
CCCGTAGAGTATATAACAACTTATCGTCTACAAATTGCCTGTCAGATGTTGGCAAAGGGGCAGGAACCTATTACCGTTAT
CAGCCATGAGTGCGGTTTAGGGAGCAGCAGTTATTTTGGAAAAGTTTTTCGGGAATATGCATATTGTTCACCTACAGAAT
ATAGAAAAAAATGGCAGAATAGTGATATGTAA

Upstream 100 bases:

>100_bases
GAAAAAACTTTTAAAACTACAAACCCAAAATTTAAAATGGATTTCCGTATATTTAACCTATAAAGTAGATACAAAATCCC
AGATGTACAGGTGAACAGAC

Downstream 100 bases:

>100_bases
TGGCGGAAAAGAAATATTTTTCCTATGTCTTTTGCATTATAATGATACCTGTAAAGTAAATCAGCAATTTACAGGAGGTG
AACGCAAAGTGATAAAACTA

Product: L-rhamnose operon transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MKNIHSIEFYTGSKEELLPDFEKDFPYIASRAELDKYIGGYVPWHWHRTVELFYMESGSIEYDTPGGKILFPAGSGGMIN
PNVLHMTKAISQREKNIQLLHIFDVSLLAGEQGSRIEQKYIAPVITAPQIEVIPLFPGNAEEERILKLLAASFRLSSDEF
GYEIKLREALTEIWLMLFELSCSMREKKGEHNKSNDKIKLMMIYIHEHYREKISILELAAAAYLSERECYRVFHDCLHMT
PVEYITTYRLQIACQMLAKGQEPITVISHECGLGSSSYFGKVFREYAYCSPTEYRKKWQNSDM

Sequences:

>Translated_303_residues
MKNIHSIEFYTGSKEELLPDFEKDFPYIASRAELDKYIGGYVPWHWHRTVELFYMESGSIEYDTPGGKILFPAGSGGMIN
PNVLHMTKAISQREKNIQLLHIFDVSLLAGEQGSRIEQKYIAPVITAPQIEVIPLFPGNAEEERILKLLAASFRLSSDEF
GYEIKLREALTEIWLMLFELSCSMREKKGEHNKSNDKIKLMMIYIHEHYREKISILELAAAAYLSERECYRVFHDCLHMT
PVEYITTYRLQIACQMLAKGQEPITVISHECGLGSSSYFGKVFREYAYCSPTEYRKKWQNSDM
>Mature_303_residues
MKNIHSIEFYTGSKEELLPDFEKDFPYIASRAELDKYIGGYVPWHWHRTVELFYMESGSIEYDTPGGKILFPAGSGGMIN
PNVLHMTKAISQREKNIQLLHIFDVSLLAGEQGSRIEQKYIAPVITAPQIEVIPLFPGNAEEERILKLLAASFRLSSDEF
GYEIKLREALTEIWLMLFELSCSMREKKGEHNKSNDKIKLMMIYIHEHYREKISILELAAAAYLSERECYRVFHDCLHMT
PVEYITTYRLQIACQMLAKGQEPITVISHECGLGSSSYFGKVFREYAYCSPTEYRKKWQNSDM

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35067; Mature: 35067

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIHSIEFYTGSKEELLPDFEKDFPYIASRAELDKYIGGYVPWHWHRTVELFYMESGSI
CCCCEEEEEEECCHHHHCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCE
EYDTPGGKILFPAGSGGMINPNVLHMTKAISQREKNIQLLHIFDVSLLAGEQGSRIEQKY
EEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCHHHHHH
IAPVITAPQIEVIPLFPGNAEEERILKLLAASFRLSSDEFGYEIKLREALTEIWLMLFEL
HCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHH
SCSMREKKGEHNKSNDKIKLMMIYIHEHYREKISILELAAAAYLSERECYRVFHDCLHMT
HHHHHHHCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PVEYITTYRLQIACQMLAKGQEPITVISHECGLGSSSYFGKVFREYAYCSPTEYRKKWQN
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCC
SDM
CCC
>Mature Secondary Structure
MKNIHSIEFYTGSKEELLPDFEKDFPYIASRAELDKYIGGYVPWHWHRTVELFYMESGSI
CCCCEEEEEEECCHHHHCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCE
EYDTPGGKILFPAGSGGMINPNVLHMTKAISQREKNIQLLHIFDVSLLAGEQGSRIEQKY
EEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCHHHHHH
IAPVITAPQIEVIPLFPGNAEEERILKLLAASFRLSSDEFGYEIKLREALTEIWLMLFEL
HCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHH
SCSMREKKGEHNKSNDKIKLMMIYIHEHYREKISILELAAAAYLSERECYRVFHDCLHMT
HHHHHHHCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PVEYITTYRLQIACQMLAKGQEPITVISHECGLGSSSYFGKVFREYAYCSPTEYRKKWQN
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCC
SDM
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]