Click here to switch to the map view.

The map label for this gene is int [H]

Identifier: 238925955

GI number: 238925955

Start: 3378148

End: 3379218

Strand: Reverse

Name: int [H]

Synonym: EUBREC_3613

Alternate gene names: 238925955

Gene position: 3379218-3378148 (Counterclockwise)

Preceding gene: 238925956

Following gene: 238925954

Centisome position: 97.96

GC content: 41.36

Gene sequence:

>1071_bases
ATGATTGATATGGCAAGAAAAGATAATAAAGGCAGAAATTTAAAAACAGGTGAATATCAGCGTCCGGATGGACGTTATGA
GTATCGCTACAAGGATGAAATTACTGGAAAGCGTAATTCGGTTTATGCAGCTGATCTGGCGAGTCTGCGAGAAATGGAAA
AGAAGATCAATAAGGATATGGAGGATCTGCTTATTACAGACGCATCAGTTAAGAAGCTGACTGTAAATACTTTGTTTGAG
CGATACATGGCAACAAAGAATATCAAGGAAAGAACGAAAAAGAATTATATCCGTATGTGGGACTATCGGATACGAAATAC
TTTGGGAAATATTCGTGTTGTAGATTTTAAGACATCTCACGTAAGGACGTTCTTTTCAGCATTGTCAGATGAAGGACTGG
CACACAGCACGATCAAAGGTCTTTATGGCTTATTGAATCCCAGTTTTGAACTGGCAGTGGAAGACGGGATTATCCGTAAG
AATCCGGTAACTGGAACACTTGGAGATTATGGGGCTCCGGCAAAAGAGAAAGAAGCACTGACACTGGAACAGCAGGAAAA
ACTTCTGAAGTTTGTTGAACAGAGTAATGTGTATAAGCCTCATCTTCCAATGATGCAGGTTATGTTTGGGGCTTGCCTGA
GAGTGAGTGAAACCATCGGCTTAACCTGGTCAGATGTGGATATGAAGAATCGGGAGATCCATGTAGGTGGACAGCTTGTA
TATTATGAAGGTGATGAAGGATATTGTTTTCATGATTCAGAAACCAAAACGGATGCAGGAATCAGAGACATTCCTATGAC
ACAGATGGTATATGATGCGTTCCGTAAACAGAGAGAGATGAACTTGATGCTTGGTTTGCAGAGTAATGTAGAGATCGGTG
GACGCAGTGGATTCATCTTCAATACAAAGCATGGACGTCCGATTATGCCAGCGGGAGTGAACAGCTTTCTGAAAAATATT
GTCAATGCCTATAATAAGAAAGAAAGCAAACTGGCAGAAGAAGAGAAACGAGAGCCGGAGCTGATGCCTCCCATTTCATC
GCATGGTCGAGTTATAATAAGGACAAGTTAG

Upstream 100 bases:

>100_bases
ATAAAATATTATGTTAATCTGTGAGCAGATATCAGACAGTATATGACTGATACAGACAGGACAAAAATCATTCCGAATAA
CGAAAAATAAAGTGAAAGGA

Downstream 100 bases:

>100_bases
AAAACTCCAGTAAATACAAGGGGTTGCACTAATTTAGTCCTTATTTTTAATTTCCTGAAAAGGGAAAAATAAAGCAGCGC
TGTCATTCCAGAATATGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Integrase [H]

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MIDMARKDNKGRNLKTGEYQRPDGRYEYRYKDEITGKRNSVYAADLASLREMEKKINKDMEDLLITDASVKKLTVNTLFE
RYMATKNIKERTKKNYIRMWDYRIRNTLGNIRVVDFKTSHVRTFFSALSDEGLAHSTIKGLYGLLNPSFELAVEDGIIRK
NPVTGTLGDYGAPAKEKEALTLEQQEKLLKFVEQSNVYKPHLPMMQVMFGACLRVSETIGLTWSDVDMKNREIHVGGQLV
YYEGDEGYCFHDSETKTDAGIRDIPMTQMVYDAFRKQREMNLMLGLQSNVEIGGRSGFIFNTKHGRPIMPAGVNSFLKNI
VNAYNKKESKLAEEEKREPELMPPISSHGRVIIRTS

Sequences:

>Translated_356_residues
MIDMARKDNKGRNLKTGEYQRPDGRYEYRYKDEITGKRNSVYAADLASLREMEKKINKDMEDLLITDASVKKLTVNTLFE
RYMATKNIKERTKKNYIRMWDYRIRNTLGNIRVVDFKTSHVRTFFSALSDEGLAHSTIKGLYGLLNPSFELAVEDGIIRK
NPVTGTLGDYGAPAKEKEALTLEQQEKLLKFVEQSNVYKPHLPMMQVMFGACLRVSETIGLTWSDVDMKNREIHVGGQLV
YYEGDEGYCFHDSETKTDAGIRDIPMTQMVYDAFRKQREMNLMLGLQSNVEIGGRSGFIFNTKHGRPIMPAGVNSFLKNI
VNAYNKKESKLAEEEKREPELMPPISSHGRVIIRTS
>Mature_356_residues
MIDMARKDNKGRNLKTGEYQRPDGRYEYRYKDEITGKRNSVYAADLASLREMEKKINKDMEDLLITDASVKKLTVNTLFE
RYMATKNIKERTKKNYIRMWDYRIRNTLGNIRVVDFKTSHVRTFFSALSDEGLAHSTIKGLYGLLNPSFELAVEDGIIRK
NPVTGTLGDYGAPAKEKEALTLEQQEKLLKFVEQSNVYKPHLPMMQVMFGACLRVSETIGLTWSDVDMKNREIHVGGQLV
YYEGDEGYCFHDSETKTDAGIRDIPMTQMVYDAFRKQREMNLMLGLQSNVEIGGRSGFIFNTKHGRPIMPAGVNSFLKNI
VNAYNKKESKLAEEEKREPELMPPISSHGRVIIRTS

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016177
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004191
- InterPro:   IPR013087 [H]

Pfam domain/function: PF02920 Integrase_DNA; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40852; Mature: 40852

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDMARKDNKGRNLKTGEYQRPDGRYEYRYKDEITGKRNSVYAADLASLREMEKKINKDM
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
EDLLITDASVKKLTVNTLFERYMATKNIKERTKKNYIRMWDYRIRNTLGNIRVVDFKTSH
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
VRTFFSALSDEGLAHSTIKGLYGLLNPSFELAVEDGIIRKNPVTGTLGDYGAPAKEKEAL
HHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCHHH
TLEQQEKLLKFVEQSNVYKPHLPMMQVMFGACLRVSETIGLTWSDVDMKNREIHVGGQLV
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEECCEEE
YYEGDEGYCFHDSETKTDAGIRDIPMTQMVYDAFRKQREMNLMLGLQSNVEIGGRSGFIF
EEECCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCEECCCCCEEE
NTKHGRPIMPAGVNSFLKNIVNAYNKKESKLAEEEKREPELMPPISSHGRVIIRTS
ECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MIDMARKDNKGRNLKTGEYQRPDGRYEYRYKDEITGKRNSVYAADLASLREMEKKINKDM
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
EDLLITDASVKKLTVNTLFERYMATKNIKERTKKNYIRMWDYRIRNTLGNIRVVDFKTSH
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
VRTFFSALSDEGLAHSTIKGLYGLLNPSFELAVEDGIIRKNPVTGTLGDYGAPAKEKEAL
HHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCHHH
TLEQQEKLLKFVEQSNVYKPHLPMMQVMFGACLRVSETIGLTWSDVDMKNREIHVGGQLV
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEECCEEE
YYEGDEGYCFHDSETKTDAGIRDIPMTQMVYDAFRKQREMNLMLGLQSNVEIGGRSGFIF
EEECCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCEECCCCCEEE
NTKHGRPIMPAGVNSFLKNIVNAYNKKESKLAEEEKREPELMPPISSHGRVIIRTS
ECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12200547 [H]