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The map label for this gene is ytrA [H]

Identifier: 238925933

GI number: 238925933

Start: 3362197

End: 3362619

Strand: Reverse

Name: ytrA [H]

Synonym: EUBREC_3591

Alternate gene names: 238925933

Gene position: 3362619-3362197 (Counterclockwise)

Preceding gene: 238925934

Following gene: 238925932

Centisome position: 97.48

GC content: 41.37

Gene sequence:

>423_bases
ATGTACTTGTACGATAAGTACATTAAAGAACAAAGGAGGGGCGTTGTGGAAATTATCATAAGCAGTAATACGAGCAAGCC
AATTTATGAGCAGATAACTTCACAGATAAAAGCCATGATTATGAGTGGCGAGTTAAAAACCGGCGATCCTATTCCCTCTA
TGCGGGCGCTGGCAAAGTCCATTCATGTGAGTGTTATTACCGTTCAAAAAGCGTATGAAGATTTGCAAAGGGACGGTTTT
ATTGAAACAACGGTAGGCCGAGGAAGTTTTGTGTCGGCACAGAACAAAGACTTTTATCAGGAAGAACAGCAGAGATTGGC
CGAAGAACATTTGCAAGAGGCCGCCGATATTGGGCGGATAAGTGGAATATCGTTGGAAAAACTGATTGAATTACTGACGA
TATTTTATCAAGAGGAGGATTAA

Upstream 100 bases:

>100_bases
AATTTCATGGAAGCCATACAAATTGTGTGGCTTCTTTTGCTTAATAAGCAAAGATAAATTTTCTAATACCCTATTGACAA
AAGCGTTTGCCTTGAATATA

Downstream 100 bases:

>100_bases
CTATGAACGCTATTTTGCAGGTTGAGAACTTGACAAAGCAATACGCCGATTTCAAGTTAGACCATGTTTCGTTTTCGGTT
CCGAAAGGAACAATCATGGG

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MYLYDKYIKEQRRGVVEIIISSNTSKPIYEQITSQIKAMIMSGELKTGDPIPSMRALAKSIHVSVITVQKAYEDLQRDGF
IETTVGRGSFVSAQNKDFYQEEQQRLAEEHLQEAADIGRISGISLEKLIELLTIFYQEED

Sequences:

>Translated_140_residues
MYLYDKYIKEQRRGVVEIIISSNTSKPIYEQITSQIKAMIMSGELKTGDPIPSMRALAKSIHVSVITVQKAYEDLQRDGF
IETTVGRGSFVSAQNKDFYQEEQQRLAEEHLQEAADIGRISGISLEKLIELLTIFYQEED
>Mature_140_residues
MYLYDKYIKEQRRGVVEIIISSNTSKPIYEQITSQIKAMIMSGELKTGDPIPSMRALAKSIHVSVITVQKAYEDLQRDGF
IETTVGRGSFVSAQNKDFYQEEQQRLAEEHLQEAADIGRISGISLEKLIELLTIFYQEED

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 15993; Mature: 15993

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLYDKYIKEQRRGVVEIIISSNTSKPIYEQITSQIKAMIMSGELKTGDPIPSMRALAKS
CCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
IHVSVITVQKAYEDLQRDGFIETTVGRGSFVSAQNKDFYQEEQQRLAEEHLQEAADIGRI
HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
SGISLEKLIELLTIFYQEED
CCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYLYDKYIKEQRRGVVEIIISSNTSKPIYEQITSQIKAMIMSGELKTGDPIPSMRALAKS
CCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
IHVSVITVQKAYEDLQRDGFIETTVGRGSFVSAQNKDFYQEEQQRLAEEHLQEAADIGRI
HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
SGISLEKLIELLTIFYQEED
CCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]