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The map label for this gene is ytdP [H]

Identifier: 238925864

GI number: 238925864

Start: 3294452

End: 3296059

Strand: Direct

Name: ytdP [H]

Synonym: EUBREC_3522

Alternate gene names: 238925864

Gene position: 3294452-3296059 (Clockwise)

Preceding gene: 238925863

Following gene: 238925867

Centisome position: 95.5

GC content: 42.48

Gene sequence:

>1608_bases
ATGATGAAGAATGTAATGATTGTAGATGACAACTGCCTCACCGCAGAAGGCATCGAAAAAAATATTGACTGGAGTGCTCT
GGATGCCACTGTGATCGCCGTAGAATATAACAGTCTTTCCGCTCTGGACATCCTGAAAGACACCCATGTAGATCTGATCA
TCTCGGATATTGAGATGCCGGATCTAGATGGGATCTCCATGAGTCAGAAAGCTCTGGAGATCCAGCCTTTCATAAAAGTT
ATTCTTGTAAGTGCCTATGACAAGTTCGAATATGCCAAACGGGCGATCCGCCTTTGTGTATATGACTATATCGAGAAACC
CTTGGATTATCATTATCTTACGGAAAAAATCAAAAATGCTTTTACGGATATCGACCGTACACAAAAAAATACGGAGTTGG
TAAAAGCAAGCCGGCCTGTTATGACAGAAAAATTCTTTCATGATCTGCTCCATTATCCCGGTGTGGATCCGGCCACTCAT
CTGAGCCAGTATCTGAAATATCTGGATCTGAGATCAGACTATGACTTTTTTGACGTATTGATCCTGGAAACAGAACCAGA
TCCTGCCAAATCCGAACTGGACTTTACCCAATACCAGATCCAGCTTCTGAATATCCTGAATCTGGTAAAAGAAGAAATGG
AGATTTTTGACAATGTTTTTTATTTAAAAGAATTCAGCGGAATCGTCTGCATCATTGGCCAGAACTCAAAACATCCCCAG
CATTTTCTTCAAGTCATACACCAAGTAGCCTCCACTATTGTCGAGTCCTGCAAAAACAATGTACTTTCTCTGAACATCGG
AATCGGAAGTCTTGCTGACAGCATCTGGAAGCTCCCGGTGTCCTTTGCCAGTGCTTCCCACTCGCTGAAATACCTATTTT
TCTTCCCACACAAAAATATTTTCGATGCGAGAGAAGCACTTGGTAAAGAATTAAATCTTTTGTCCTTTTCCGAAAATACC
GACGAAGAACTGATACGTCTTATCTGTTCCAAAGACATGACTGCTATCGAAGAATGGATTACCTGCTATTTTCAGAATCT
GTTAGGACAGGTTCAGGACAAAAATCTGGTTTTCATCCGAATCTACTCCCTTTTGGGACGAATTCTGAAATTCTTATACG
AGATGAACCTGGATACCGGAGATTTGGAGAGGGAAATCATCCAGGTCTATACCCGGTTTGATTCCTTCCGCACCTACGAA
CAATTTGTAAAATGGCTGACGCAGTTATGTGCCTCCGTATGCGAAAAGATGGATTCATCCTTACAGAACTATCACAATCA
GATATATACCATGGCTCTTGGATATATCCGGGAAAACTTTGAAACCAACACCCTGTGCCTGAATGATATCGCACGACATG
CCAACATCAGCCCTGCATATCTGAGTTCTCTGTTCAAAAAGGTATCCGGGCAAAGCATCAGTGATACCATCACTGCGCTT
CGCATCGAAAGTGCCTGTCATTATCTGGAATCCACCAGTCTTTCGTTAAAAGAGATCAGCACAAAGTGTGGTTATACGAA
TCAATATTATTTCAGCAACAGTTTTAAGAAGAAACTGGGGATGTCCCCTTCTGCTTATCGGGAAGCGAGAGGCACGCAGG
GGCAGTGA

Upstream 100 bases:

>100_bases
CGAATCTCCAATCCTTATTTTGGAAATGGTAGGATATCTGTAGAAAGTTGTCTGTATGAAGGCACTTCCATTACCATTGA
ATTTGATCAGATGGAGAAAT

Downstream 100 bases:

>100_bases
TTTCGTGCAGGCACGGACTTGGGCTCCTTGCTCGCGTAAAATACAATAGCCGGGCAGCTCCTGCTCGACTATATTTTCTT
ACTTTATACAATCCTACCGG

Product: CheY-like receiver domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MMKNVMIVDDNCLTAEGIEKNIDWSALDATVIAVEYNSLSALDILKDTHVDLIISDIEMPDLDGISMSQKALEIQPFIKV
ILVSAYDKFEYAKRAIRLCVYDYIEKPLDYHYLTEKIKNAFTDIDRTQKNTELVKASRPVMTEKFFHDLLHYPGVDPATH
LSQYLKYLDLRSDYDFFDVLILETEPDPAKSELDFTQYQIQLLNILNLVKEEMEIFDNVFYLKEFSGIVCIIGQNSKHPQ
HFLQVIHQVASTIVESCKNNVLSLNIGIGSLADSIWKLPVSFASASHSLKYLFFFPHKNIFDAREALGKELNLLSFSENT
DEELIRLICSKDMTAIEEWITCYFQNLLGQVQDKNLVFIRIYSLLGRILKFLYEMNLDTGDLEREIIQVYTRFDSFRTYE
QFVKWLTQLCASVCEKMDSSLQNYHNQIYTMALGYIRENFETNTLCLNDIARHANISPAYLSSLFKKVSGQSISDTITAL
RIESACHYLESTSLSLKEISTKCGYTNQYYFSNSFKKKLGMSPSAYREARGTQGQ

Sequences:

>Translated_535_residues
MMKNVMIVDDNCLTAEGIEKNIDWSALDATVIAVEYNSLSALDILKDTHVDLIISDIEMPDLDGISMSQKALEIQPFIKV
ILVSAYDKFEYAKRAIRLCVYDYIEKPLDYHYLTEKIKNAFTDIDRTQKNTELVKASRPVMTEKFFHDLLHYPGVDPATH
LSQYLKYLDLRSDYDFFDVLILETEPDPAKSELDFTQYQIQLLNILNLVKEEMEIFDNVFYLKEFSGIVCIIGQNSKHPQ
HFLQVIHQVASTIVESCKNNVLSLNIGIGSLADSIWKLPVSFASASHSLKYLFFFPHKNIFDAREALGKELNLLSFSENT
DEELIRLICSKDMTAIEEWITCYFQNLLGQVQDKNLVFIRIYSLLGRILKFLYEMNLDTGDLEREIIQVYTRFDSFRTYE
QFVKWLTQLCASVCEKMDSSLQNYHNQIYTMALGYIRENFETNTLCLNDIARHANISPAYLSSLFKKVSGQSISDTITAL
RIESACHYLESTSLSLKEISTKCGYTNQYYFSNSFKKKLGMSPSAYREARGTQGQ
>Mature_535_residues
MMKNVMIVDDNCLTAEGIEKNIDWSALDATVIAVEYNSLSALDILKDTHVDLIISDIEMPDLDGISMSQKALEIQPFIKV
ILVSAYDKFEYAKRAIRLCVYDYIEKPLDYHYLTEKIKNAFTDIDRTQKNTELVKASRPVMTEKFFHDLLHYPGVDPATH
LSQYLKYLDLRSDYDFFDVLILETEPDPAKSELDFTQYQIQLLNILNLVKEEMEIFDNVFYLKEFSGIVCIIGQNSKHPQ
HFLQVIHQVASTIVESCKNNVLSLNIGIGSLADSIWKLPVSFASASHSLKYLFFFPHKNIFDAREALGKELNLLSFSENT
DEELIRLICSKDMTAIEEWITCYFQNLLGQVQDKNLVFIRIYSLLGRILKFLYEMNLDTGDLEREIIQVYTRFDSFRTYE
QFVKWLTQLCASVCEKMDSSLQNYHNQIYTMALGYIRENFETNTLCLNDIARHANISPAYLSSLFKKVSGQSISDTITAL
RIESACHYLESTSLSLKEISTKCGYTNQYYFSNSFKKKLGMSPSAYREARGTQGQ

Specific function: Transcription Activator For The Expression Of The Melab Operon. Melr Binds At Two Sites Located Upstream Of The Melab Transcription Site. [C]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=105, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 61632; Mature: 61632

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKNVMIVDDNCLTAEGIEKNIDWSALDATVIAVEYNSLSALDILKDTHVDLIISDIEMP
CCCCEEEECCCCCCCCCCCCCCCCCHHCEEEEEEEECCCHHHHHHHHCCCEEEEECCCCC
DLDGISMSQKALEIQPFIKVILVSAYDKFEYAKRAIRLCVYDYIEKPLDYHYLTEKIKNA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
FTDIDRTQKNTELVKASRPVMTEKFFHDLLHYPGVDPATHLSQYLKYLDLRSDYDFFDVL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
ILETEPDPAKSELDFTQYQIQLLNILNLVKEEMEIFDNVFYLKEFSGIVCIIGQNSKHPQ
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH
HFLQVIHQVASTIVESCKNNVLSLNIGIGSLADSIWKLPVSFASASHSLKYLFFFPHKNI
HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
FDAREALGKELNLLSFSENTDEELIRLICSKDMTAIEEWITCYFQNLLGQVQDKNLVFIR
HHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHH
IYSLLGRILKFLYEMNLDTGDLEREIIQVYTRFDSFRTYEQFVKWLTQLCASVCEKMDSS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQNYHNQIYTMALGYIRENFETNTLCLNDIARHANISPAYLSSLFKKVSGQSISDTITAL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH
RIESACHYLESTSLSLKEISTKCGYTNQYYFSNSFKKKLGMSPSAYREARGTQGQ
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MMKNVMIVDDNCLTAEGIEKNIDWSALDATVIAVEYNSLSALDILKDTHVDLIISDIEMP
CCCCEEEECCCCCCCCCCCCCCCCCHHCEEEEEEEECCCHHHHHHHHCCCEEEEECCCCC
DLDGISMSQKALEIQPFIKVILVSAYDKFEYAKRAIRLCVYDYIEKPLDYHYLTEKIKNA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
FTDIDRTQKNTELVKASRPVMTEKFFHDLLHYPGVDPATHLSQYLKYLDLRSDYDFFDVL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
ILETEPDPAKSELDFTQYQIQLLNILNLVKEEMEIFDNVFYLKEFSGIVCIIGQNSKHPQ
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH
HFLQVIHQVASTIVESCKNNVLSLNIGIGSLADSIWKLPVSFASASHSLKYLFFFPHKNI
HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
FDAREALGKELNLLSFSENTDEELIRLICSKDMTAIEEWITCYFQNLLGQVQDKNLVFIR
HHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHH
IYSLLGRILKFLYEMNLDTGDLEREIIQVYTRFDSFRTYEQFVKWLTQLCASVCEKMDSS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQNYHNQIYTMALGYIRENFETNTLCLNDIARHANISPAYLSSLFKKVSGQSISDTITAL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH
RIESACHYLESTSLSLKEISTKCGYTNQYYFSNSFKKKLGMSPSAYREARGTQGQ
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]