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The map label for this gene is intR [C]

Identifier: 238925836

GI number: 238925836

Start: 3272463

End: 3273758

Strand: Reverse

Name: intR [C]

Synonym: EUBREC_3494

Alternate gene names: 238925836

Gene position: 3273758-3272463 (Counterclockwise)

Preceding gene: 238925837

Following gene: 238925835

Centisome position: 94.9

GC content: 41.36

Gene sequence:

>1296_bases
ATGGCAAAAGGATCTGTAAGAAAAAAAGGAAAGAAATGGTACTACCGCTTCTATGTAGAAGATGCAAGCGGCAATCTGGT
TCAGAAAGAATACGCTGGAACAGAAAGTAAAAGTGAAACGGAAAAACTGCTCCGTCAGGCAATGGACGATTACGAAAGCA
AGAAATTCATTGCAAAGTCGGAAAATATTACAATTGGAGAATTACTTGATATATGGGCAGAGGAAGAATTAAAGACCGGT
ATGCTCAGTAATGGGACAGTCCAGAATTACCTCGGTGCCATTACCAACATCAAGAAGCATCCAATTTCAGAGAGAAAGTT
GAAAAATGTAACATCTGAGCATTTACAAGCCTTCTTCGATCTGCTTTCCTTTGGTGGCACTTATCCAGATGGTTCAGAAA
GAAAAGGTTATAGCAAAGATTACATTCGTTCTTTCTCGGCAGTATTACAGCAGTCATTCCGATTTGCAGTATCACCAAAG
CAATATATCACTTTCAATCCGATGCAGTATATTAAGCTGAAATACCAGACGGATGAGGTTGACCTGTTTTCCGATGATGA
CATGGATGGCGATATACAGCCAATTCCACGAGAGGATTATGAAAGACTGATTGAATTTCTACAGAATTACAATCCACCGG
CAATACTTCCAATCCAGATAGCTTATTATGCAGGACTTCGTATCGGTGAAGCCTGTGGTCTGGCATGGCAGGATGTGAAT
CTTGAAGAACAGTGCCTTACAATCAGACGCAGTATCCGATATGATGGTTCAAGGCACAAGAATATCATCGGACCAACCAA
ACGAAAAAAGGTAAGGATTGTTGATTTTGGAGATACACTGGCAGAGATTCTTCGCAATGCCCGAAAGGAACAACTTAAAA
ACCGAATGCAGTACGGAGAACTTTACCATAAAAACTACTACAGAGAAGTAAAAGACAAAAACAGAGTTTACTATGAGTTC
TATCATCTAGACGGAACAGAGAACGTTCCAGAGGATTATAAGGAAATATCCTTTGTCTGCTTAAGACCGGATGGAAGTCT
GGAACTGCCAAGCACGTTAGGAATTGTTTGCAGGAAGATTGCTCAGAAACTGGATGGATTTGAAGGATTTCATTTTCACC
AGCTGCGACACACCTACACAAGCAACCTTCTGGCAAATGGAGCAGCACCAAAGGATGTGCAGGAACTGTTAGGGCACTCA
GATGTCAGTACCACCATGAATGTCTATGCACACTCTACAAGAAAAGCCAAGCGGGAATCTGCAAGGTTACTTGATAAAGT
GGCAGGCAATGACTAA

Upstream 100 bases:

>100_bases
CCGATTCGGTATAGAACGACAACCGGAGTTATGATATACTTACACGCAAGAAGCATTTCATCAGTTCCGATTGTCTGATA
TCGAAAGGAGACACACGATT

Downstream 100 bases:

>100_bases
ATAAAACTTTCCCTTATTTCCCTTACGATTATCTCATAAGGGCAAAAATAAGGGAAAATACATATCGTTTCGCTAATGCA
CAGGCTGGAAAGCCTGTAAA

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MAKGSVRKKGKKWYYRFYVEDASGNLVQKEYAGTESKSETEKLLRQAMDDYESKKFIAKSENITIGELLDIWAEEELKTG
MLSNGTVQNYLGAITNIKKHPISERKLKNVTSEHLQAFFDLLSFGGTYPDGSERKGYSKDYIRSFSAVLQQSFRFAVSPK
QYITFNPMQYIKLKYQTDEVDLFSDDDMDGDIQPIPREDYERLIEFLQNYNPPAILPIQIAYYAGLRIGEACGLAWQDVN
LEEQCLTIRRSIRYDGSRHKNIIGPTKRKKVRIVDFGDTLAEILRNARKEQLKNRMQYGELYHKNYYREVKDKNRVYYEF
YHLDGTENVPEDYKEISFVCLRPDGSLELPSTLGIVCRKIAQKLDGFEGFHFHQLRHTYTSNLLANGAAPKDVQELLGHS
DVSTTMNVYAHSTRKAKRESARLLDKVAGND

Sequences:

>Translated_431_residues
MAKGSVRKKGKKWYYRFYVEDASGNLVQKEYAGTESKSETEKLLRQAMDDYESKKFIAKSENITIGELLDIWAEEELKTG
MLSNGTVQNYLGAITNIKKHPISERKLKNVTSEHLQAFFDLLSFGGTYPDGSERKGYSKDYIRSFSAVLQQSFRFAVSPK
QYITFNPMQYIKLKYQTDEVDLFSDDDMDGDIQPIPREDYERLIEFLQNYNPPAILPIQIAYYAGLRIGEACGLAWQDVN
LEEQCLTIRRSIRYDGSRHKNIIGPTKRKKVRIVDFGDTLAEILRNARKEQLKNRMQYGELYHKNYYREVKDKNRVYYEF
YHLDGTENVPEDYKEISFVCLRPDGSLELPSTLGIVCRKIAQKLDGFEGFHFHQLRHTYTSNLLANGAAPKDVQELLGHS
DVSTTMNVYAHSTRKAKRESARLLDKVAGND
>Mature_430_residues
AKGSVRKKGKKWYYRFYVEDASGNLVQKEYAGTESKSETEKLLRQAMDDYESKKFIAKSENITIGELLDIWAEEELKTGM
LSNGTVQNYLGAITNIKKHPISERKLKNVTSEHLQAFFDLLSFGGTYPDGSERKGYSKDYIRSFSAVLQQSFRFAVSPKQ
YITFNPMQYIKLKYQTDEVDLFSDDDMDGDIQPIPREDYERLIEFLQNYNPPAILPIQIAYYAGLRIGEACGLAWQDVNL
EEQCLTIRRSIRYDGSRHKNIIGPTKRKKVRIVDFGDTLAEILRNARKEQLKNRMQYGELYHKNYYREVKDKNRVYYEFY
HLDGTENVPEDYKEISFVCLRPDGSLELPSTLGIVCRKIAQKLDGFEGFHFHQLRHTYTSNLLANGAAPKDVQELLGHSD
VSTTMNVYAHSTRKAKRESARLLDKVAGND

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=353, Percent_Identity=24.3626062322946, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 49792; Mature: 49661

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGSVRKKGKKWYYRFYVEDASGNLVQKEYAGTESKSETEKLLRQAMDDYESKKFIAKS
CCCCCCCCCCCEEEEEEEEECCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECC
ENITIGELLDIWAEEELKTGMLSNGTVQNYLGAITNIKKHPISERKLKNVTSEHLQAFFD
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LLSFGGTYPDGSERKGYSKDYIRSFSAVLQQSFRFAVSPKQYITFNPMQYIKLKYQTDEV
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCCE
DLFSDDDMDGDIQPIPREDYERLIEFLQNYNPPAILPIQIAYYAGLRIGEACGLAWQDVN
EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCHHHHCCEEECCC
LEEQCLTIRRSIRYDGSRHKNIIGPTKRKKVRIVDFGDTLAEILRNARKEQLKNRMQYGE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
LYHKNYYREVKDKNRVYYEFYHLDGTENVPEDYKEISFVCLRPDGSLELPSTLGIVCRKI
HHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHCCEEEEECCCCCCCCCHHHHHHHHHH
AQKLDGFEGFHFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRES
HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ARLLDKVAGND
HHHHHHHCCCC
>Mature Secondary Structure 
AKGSVRKKGKKWYYRFYVEDASGNLVQKEYAGTESKSETEKLLRQAMDDYESKKFIAKS
CCCCCCCCCCEEEEEEEEECCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECC
ENITIGELLDIWAEEELKTGMLSNGTVQNYLGAITNIKKHPISERKLKNVTSEHLQAFFD
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LLSFGGTYPDGSERKGYSKDYIRSFSAVLQQSFRFAVSPKQYITFNPMQYIKLKYQTDEV
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCCE
DLFSDDDMDGDIQPIPREDYERLIEFLQNYNPPAILPIQIAYYAGLRIGEACGLAWQDVN
EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCHHHHCCEEECCC
LEEQCLTIRRSIRYDGSRHKNIIGPTKRKKVRIVDFGDTLAEILRNARKEQLKNRMQYGE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
LYHKNYYREVKDKNRVYYEFYHLDGTENVPEDYKEISFVCLRPDGSLELPSTLGIVCRKI
HHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHCCEEEEECCCCCCCCCHHHHHHHHHH
AQKLDGFEGFHFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRES
HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ARLLDKVAGND
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]