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The map label for this gene is ymdB [C]

Identifier: 238925774

GI number: 238925774

Start: 3229338

End: 3229877

Strand: Reverse

Name: ymdB [C]

Synonym: EUBREC_3431

Alternate gene names: 238925774

Gene position: 3229877-3229338 (Counterclockwise)

Preceding gene: 238925775

Following gene: 238925773

Centisome position: 93.63

GC content: 41.11

Gene sequence:

>540_bases
ATGATAAGGACAGTAAAAGGCGATATTACAAAAATTAGAGATGTGCAGGCAATTGTAAATGCAGCAAACAACTCGCTTCT
TGGTGGAGGCGGTGTAGATGGTGCTATTCACAGAGCCGCAGGACCGGAACTTCTGGCAGAGTGCAGGACACTTCACGGAT
GTGAAACAGGAGAAGCAAAGATAACAAAAGCCTATAATTTACCATGTGATTATGTTATTCATACTGTAGGACCGATATGG
AATGGAGGAAGGAATAGAGAAGAGGAGCTTCTTGCTAACTGCTATTTTAATTCCATGAAGCTGGCAATGGATAATGGAAT
AAGGTCTATTGCATTTCCTTCCATATCAACGGGAGCTTATGGTTTTCCGGTTGAGTTGGCAGCAAATATTGCAGTACATA
CAGTAAACAGGTTCTTGCAGGATAATCTGAACAGCTTCGATTTGGTGGAATGGGTGCTGTTTGATACTCATACTGAATCG
GTGTACGAAGCTGCGGAAAAATCATACATGGAAGATGAAAGTGATGATTTTGATTTTTGA

Upstream 100 bases:

>100_bases
TGACGGAGGACAGAAGCTTGTAAGATTTTATGATCCGTCCGGCAATCTAATAGAGATTCGTACACCATGGGATAAATTGG
GAATAGAGAGTGATTAGGAT

Downstream 100 bases:

>100_bases
TTAAAGTTTTGATTGAGTATTTTGGAACAAAGATTCGAATTGCGAGGGCAGACTTTGGGACTCGTAAAGTCATATACTAA
AGACAATCAAAGAGCTGATA

Product: Appr-1-p processing enzyme family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MIRTVKGDITKIRDVQAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLHGCETGEAKITKAYNLPCDYVIHTVGPIW
NGGRNREEELLANCYFNSMKLAMDNGIRSIAFPSISTGAYGFPVELAANIAVHTVNRFLQDNLNSFDLVEWVLFDTHTES
VYEAAEKSYMEDESDDFDF

Sequences:

>Translated_179_residues
MIRTVKGDITKIRDVQAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLHGCETGEAKITKAYNLPCDYVIHTVGPIW
NGGRNREEELLANCYFNSMKLAMDNGIRSIAFPSISTGAYGFPVELAANIAVHTVNRFLQDNLNSFDLVEWVLFDTHTES
VYEAAEKSYMEDESDDFDF
>Mature_179_residues
MIRTVKGDITKIRDVQAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLHGCETGEAKITKAYNLPCDYVIHTVGPIW
NGGRNREEELLANCYFNSMKLAMDNGIRSIAFPSISTGAYGFPVELAANIAVHTVNRFLQDNLNSFDLVEWVLFDTHTES
VYEAAEKSYMEDESDDFDF

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=150, Percent_Identity=61.3333333333333, Blast_Score=176, Evalue=9e-45,
Organism=Homo sapiens, GI13569840, Length=170, Percent_Identity=48.8235294117647, Blast_Score=163, Evalue=7e-41,
Organism=Homo sapiens, GI207450721, Length=136, Percent_Identity=41.1764705882353, Blast_Score=107, Evalue=4e-24,
Organism=Homo sapiens, GI8923143, Length=136, Percent_Identity=41.1764705882353, Blast_Score=107, Evalue=5e-24,
Organism=Homo sapiens, GI20336746, Length=166, Percent_Identity=32.5301204819277, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI154813199, Length=166, Percent_Identity=36.7469879518072, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI93141020, Length=154, Percent_Identity=31.1688311688312, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI4758496, Length=154, Percent_Identity=31.1688311688312, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI93141018, Length=154, Percent_Identity=31.1688311688312, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI226371716, Length=158, Percent_Identity=31.6455696202532, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371714, Length=158, Percent_Identity=31.6455696202532, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371712, Length=158, Percent_Identity=31.6455696202532, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371718, Length=158, Percent_Identity=32.2784810126582, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI226371710, Length=158, Percent_Identity=32.2784810126582, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI226371706, Length=158, Percent_Identity=32.2784810126582, Blast_Score=71, Evalue=6e-13,
Organism=Escherichia coli, GI1787283, Length=166, Percent_Identity=51.8072289156626, Blast_Score=157, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17538214, Length=153, Percent_Identity=47.7124183006536, Blast_Score=123, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24586353, Length=135, Percent_Identity=35.5555555555556, Blast_Score=84, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19664; Mature: 19664

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTVKGDITKIRDVQAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLHGCETGEAK
CCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCE
ITKAYNLPCDYVIHTVGPIWNGGRNREEELLANCYFNSMKLAMDNGIRSIAFPSISTGAY
EEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC
GFPVELAANIAVHTVNRFLQDNLNSFDLVEWVLFDTHTESVYEAAEKSYMEDESDDFDF
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIRTVKGDITKIRDVQAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLHGCETGEAK
CCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCE
ITKAYNLPCDYVIHTVGPIWNGGRNREEELLANCYFNSMKLAMDNGIRSIAFPSISTGAY
EEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC
GFPVELAANIAVHTVNRFLQDNLNSFDLVEWVLFDTHTESVYEAAEKSYMEDESDDFDF
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]