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The map label for this gene is yoeC [H]

Identifier: 238925744

GI number: 238925744

Start: 3211599

End: 3212177

Strand: Direct

Name: yoeC [H]

Synonym: EUBREC_3401

Alternate gene names: 238925744

Gene position: 3211599-3212177 (Clockwise)

Preceding gene: 238925740

Following gene: 238925757

Centisome position: 93.1

GC content: 42.83

Gene sequence:

>579_bases
ATGGGAACTACACAGCCAATCCGAAACAAGGACGAACTCACGGCTTTCAGGATGTACTATAAGGACCTCCTTCCAAACAG
CCGCAATTACTGTTTAATTGTGATGGGATTAAACACAGCACTAAGAATTAGTGACCTGCTTAGATTAAAGTGGGACAACG
TTTACAATTTCAAACATCATGAATTTCGCACTCATTTTCTTATCAACGAGCAAAAGACCGGCAAGAATAACTATATCACT
CTAAACTACAATGCCACCGATGCTCTCCGGGCATATTTCAATGAACGGCATCCGACTGAACATGAGTTTATTTTTACAAA
AGCCACCTGCAGGAGGCAGCCAATAAACAGAGTTCAGGCATACCGAATTGTAAGGACTGCTGCCGAGGAGACAGTTCAGG
ATGAACATATCAGCTGTCACTCTCTGAGAAAGACATTTGGATATCACGCCTGGAAGAATGGCACACCACCTGCTCTGCTG
ATGGACGTCTACAATCACTCGTCCTATAAAGTCACACAGCATTATCTGGGTATTGAGCAGGATGAACGTGATGAGATTTA
TATGAATCTTGAGCTATAG

Upstream 100 bases:

>100_bases
AACTTACCATTATTGTGTTGTGGATTTTGGATATTCTGAGGGTGAAAGTCTGTCATATTGTACGTGCCGGATAACATTTT
CTACTATAAAGGAGTATTCA

Downstream 100 bases:

>100_bases
TTTTATGCGTATTGAAATCTAATATAGCTAAAAGCCAGCCGTTTGCAACCGGCTGGCTTTTTTGGGGATATACAAATCAT
CGAAATCCTCTGTTAAACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MGTTQPIRNKDELTAFRMYYKDLLPNSRNYCLIVMGLNTALRISDLLRLKWDNVYNFKHHEFRTHFLINEQKTGKNNYIT
LNYNATDALRAYFNERHPTEHEFIFTKATCRRQPINRVQAYRIVRTAAEETVQDEHISCHSLRKTFGYHAWKNGTPPALL
MDVYNHSSYKVTQHYLGIEQDERDEIYMNLEL

Sequences:

>Translated_192_residues
MGTTQPIRNKDELTAFRMYYKDLLPNSRNYCLIVMGLNTALRISDLLRLKWDNVYNFKHHEFRTHFLINEQKTGKNNYIT
LNYNATDALRAYFNERHPTEHEFIFTKATCRRQPINRVQAYRIVRTAAEETVQDEHISCHSLRKTFGYHAWKNGTPPALL
MDVYNHSSYKVTQHYLGIEQDERDEIYMNLEL
>Mature_191_residues
GTTQPIRNKDELTAFRMYYKDLLPNSRNYCLIVMGLNTALRISDLLRLKWDNVYNFKHHEFRTHFLINEQKTGKNNYITL
NYNATDALRAYFNERHPTEHEFIFTKATCRRQPINRVQAYRIVRTAAEETVQDEHISCHSLRKTFGYHAWKNGTPPALLM
DVYNHSSYKVTQHYLGIEQDERDEIYMNLEL

Specific function: Fime Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fime Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 22910; Mature: 22779

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTTQPIRNKDELTAFRMYYKDLLPNSRNYCLIVMGLNTALRISDLLRLKWDNVYNFKHH
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEECCCCC
EFRTHFLINEQKTGKNNYITLNYNATDALRAYFNERHPTEHEFIFTKATCRRQPINRVQA
CEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEEEHHHHCCCHHHHHHH
YRIVRTAAEETVQDEHISCHSLRKTFGYHAWKNGTPPALLMDVYNHSSYKVTQHYLGIEQ
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCC
DERDEIYMNLEL
CCCCEEEEEEEC
>Mature Secondary Structure 
GTTQPIRNKDELTAFRMYYKDLLPNSRNYCLIVMGLNTALRISDLLRLKWDNVYNFKHH
CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEECCCCC
EFRTHFLINEQKTGKNNYITLNYNATDALRAYFNERHPTEHEFIFTKATCRRQPINRVQA
CEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEEEHHHHCCCHHHHHHH
YRIVRTAAEETVQDEHISCHSLRKTFGYHAWKNGTPPALLMDVYNHSSYKVTQHYLGIEQ
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCC
DERDEIYMNLEL
CCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]