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The map label for this gene is agaR [H]

Identifier: 238925729

GI number: 238925729

Start: 3197798

End: 3198649

Strand: Direct

Name: agaR [H]

Synonym: EUBREC_3386

Alternate gene names: 238925729

Gene position: 3197798-3198649 (Clockwise)

Preceding gene: 238925728

Following gene: 238925738

Centisome position: 92.7

GC content: 39.2

Gene sequence:

>852_bases
ATGCTTTTTTTGTGCGCTATACTTGTATCAACAAACATAAGGAACAAGTGCACAGATTCAATTGTAAAAGAGGTAGTATA
TGAGACAGATTATTTTTCACAAGGAAACAAAAACTTTCCATATATTTTAGGTGTATATGCTCTGTATGAACGTTTGACAA
ATGAGTTTCCAGAAGTATTATTTGAATCCTGCGCCAGCGGTGGCGGAAGATTTGACCCGGGAATGCTGTATTATGCACCA
CAGGGATGGACAAGTGATGATTCGGATGCAATTGAGCGTCTGAAGATTCAGTATGGAACTTCTATGTGTTATCCGCTCAG
CAGTATGGGAAGCCATGTGTCTGTTGTCCCTAATCACCAGGTATTTCGCAATACCCCATTACATACAAGAGCGAATGTAG
CATACTTTGGAACTTTTGGATACGAACTGGATCTCAACAAATTGACAGAAGAAGAGATCAAAGAAGTAAAAGAACAGATC
ACATTTATGAAAGAATACCGGGAAGTGTTACAGTTTGGAACATTTTATCGTCTGAAAAGTCCATTCGAAGGAAATGAGAC
GGTATGGATGGTGACAAATGAAGACCGCACGCTTGCAATCGTAGGCTACTATCGTGTTTTAAATGGAGTAAATCAGCCGT
ATAGCCGTGTCAGATTACAGGGATTGAACCCTGATATGATTTATGAAAATGTATGGAACCATACAGAAAATTACGGAGAT
GAATTAATGAATTATGGATTGATCACATCCGATGCGACAGCTGGTGAAGTGCCAGGGAATGTGACTCCTTGTACCGATTT
TGAATCTAGAATATATATGCTGAAAGGCAAAAAAGTTCAGGAGGTAAGATAG

Upstream 100 bases:

>100_bases
ATATTGTATTTTTTTCTTAGATAAAAGAATAGATAAAATGTTAAAAAAGCATCTGATGCCTAACATTTGAGATATAAATC
CTAACAAAAAGGTATAACAG

Downstream 100 bases:

>100_bases
AAAATGACGAAGACAAAAAGTGGACTTCCAGAATAGGCAATATTCCATCGCAAAACAGGCTGCAGAACCGCCTGCTCTTG
ATATGCGTTTTAGTAACTGT

Product: alpha-galactosidase, putative

Products: NA

Alternate protein names: Melibiase [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MLFLCAILVSTNIRNKCTDSIVKEVVYETDYFSQGNKNFPYILGVYALYERLTNEFPEVLFESCASGGGRFDPGMLYYAP
QGWTSDDSDAIERLKIQYGTSMCYPLSSMGSHVSVVPNHQVFRNTPLHTRANVAYFGTFGYELDLNKLTEEEIKEVKEQI
TFMKEYREVLQFGTFYRLKSPFEGNETVWMVTNEDRTLAIVGYYRVLNGVNQPYSRVRLQGLNPDMIYENVWNHTENYGD
ELMNYGLITSDATAGEVPGNVTPCTDFESRIYMLKGKKVQEVR

Sequences:

>Translated_283_residues
MLFLCAILVSTNIRNKCTDSIVKEVVYETDYFSQGNKNFPYILGVYALYERLTNEFPEVLFESCASGGGRFDPGMLYYAP
QGWTSDDSDAIERLKIQYGTSMCYPLSSMGSHVSVVPNHQVFRNTPLHTRANVAYFGTFGYELDLNKLTEEEIKEVKEQI
TFMKEYREVLQFGTFYRLKSPFEGNETVWMVTNEDRTLAIVGYYRVLNGVNQPYSRVRLQGLNPDMIYENVWNHTENYGD
ELMNYGLITSDATAGEVPGNVTPCTDFESRIYMLKGKKVQEVR
>Mature_283_residues
MLFLCAILVSTNIRNKCTDSIVKEVVYETDYFSQGNKNFPYILGVYALYERLTNEFPEVLFESCASGGGRFDPGMLYYAP
QGWTSDDSDAIERLKIQYGTSMCYPLSSMGSHVSVVPNHQVFRNTPLHTRANVAYFGTFGYELDLNKLTEEEIKEVKEQI
TFMKEYREVLQFGTFYRLKSPFEGNETVWMVTNEDRTLAIVGYYRVLNGVNQPYSRVRLQGLNPDMIYENVWNHTENYGD
ELMNYGLITSDATAGEVPGNVTPCTDFESRIYMLKGKKVQEVR

Specific function: Alpha-galactosidase associated with the raffinose operon [H]

COG id: COG3345

COG function: function code G; Alpha-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 36 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR002252
- InterPro:   IPR017853
- InterPro:   IPR000111 [H]

Pfam domain/function: PF02065 Melibiase [H]

EC number: =3.2.1.22 [H]

Molecular weight: Translated: 32501; Mature: 32501

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFLCAILVSTNIRNKCTDSIVKEVVYETDYFSQGNKNFPYILGVYALYERLTNEFPEVL
CHHEEEHHHHCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FESCASGGGRFDPGMLYYAPQGWTSDDSDAIERLKIQYGTSMCYPLSSMGSHVSVVPNHQ
HHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCEECCHHHCCCEEEECCCCH
VFRNTPLHTRANVAYFGTFGYELDLNKLTEEEIKEVKEQITFMKEYREVLQFGTFYRLKS
HHCCCCCCCCCCEEEEEEECEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEECC
PFEGNETVWMVTNEDRTLAIVGYYRVLNGVNQPYSRVRLQGLNPDMIYENVWNHTENYGD
CCCCCCEEEEEECCCCEEEEEHHHHHHCCCCCCHHHEEECCCCHHHHHHHHHHCHHHHHH
ELMNYGLITSDATAGEVPGNVTPCTDFESRIYMLKGKKVQEVR
HHHHCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHCCC
>Mature Secondary Structure
MLFLCAILVSTNIRNKCTDSIVKEVVYETDYFSQGNKNFPYILGVYALYERLTNEFPEVL
CHHEEEHHHHCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FESCASGGGRFDPGMLYYAPQGWTSDDSDAIERLKIQYGTSMCYPLSSMGSHVSVVPNHQ
HHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCEECCHHHCCCEEEECCCCH
VFRNTPLHTRANVAYFGTFGYELDLNKLTEEEIKEVKEQITFMKEYREVLQFGTFYRLKS
HHCCCCCCCCCCEEEEEEECEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEECC
PFEGNETVWMVTNEDRTLAIVGYYRVLNGVNQPYSRVRLQGLNPDMIYENVWNHTENYGD
CCCCCCEEEEEECCCCEEEEEHHHHHHCCCCCCHHHEEECCCCHHHHHHHHHHCHHHHHH
ELMNYGLITSDATAGEVPGNVTPCTDFESRIYMLKGKKVQEVR
HHHHCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA