Click here to switch to the map view.

The map label for this gene is ybiR [C]

Identifier: 238925728

GI number: 238925728

Start: 3196573

End: 3197721

Strand: Direct

Name: ybiR [C]

Synonym: EUBREC_3385

Alternate gene names: 238925728

Gene position: 3196573-3197721 (Clockwise)

Preceding gene: 238925722

Following gene: 238925729

Centisome position: 92.66

GC content: 40.82

Gene sequence:

>1149_bases
ATGTTACAAAAATTATATGTTTTTTTCAGGAAAGAAACTGTTTTGTCAATTGCAGTGATCCTGGCGCTTCTTTCTATGTT
CTGGGTCAGACCGGATAAGGCTTATTTTACTTATATCGATTTCAGGACTCTCGGGCTCCTCTTCTGTTTGATGGCAATTG
TAGCTGGTTTGAAGGCTGTTGGTGTTTTTGATATACTTGCCCAAAAATTGCTGATGGGAACATCAGGAACTGTGGGTGTG
ATCAGGCTGTTGGTACTCTTATGTTTCTTCCTGTCAATGGTGATCACCAATGATGTGGCATTGATTACTTTTGTTCCTTT
TGCACTGATCATTGTGCATAAACTGCCAAAGGAACTGGGTAATTACTGGCTTCTTAAAATAGTAGCCATGCAGACAATCG
CTGCTAATCTCGGAAGCATGCTCACACCAATCGGAAATCCGCAGAACCTTTATCTATATGCCAGAGCAGGGATGTCCGCG
GCAGAATTAATAACCCTGATGCTTCCCTATTCCGCCACAGCACTTATCCTTCTTCTGATATGGATACAGGTAGCCGCTGC
CAAAGCACCTCACGTATGCGGTTCCGAAAAAGATAAAACTCTTTTGGGATTCTCTGACAGAAAAGAACTTAACATGGAAT
ACCTGGCCGCTTACCTGATCTTATTTACAATCTGCCTGCTCACTGTTGCACGTATCATTCCATACCAGATTCCTCTTGTA
TTGGTTCTTATATATATGCTGCTAAGAAACAGGGAAAATATAAGCAGGGTGGATTACTCCCTGCTTGCCACCTTTATCGC
ATTATTTATTTTTATCGGCAACCTTGGAAGGATTCCGCAATTCAGCAGTTTTCTTGAAACAATCATGGCAGGAAGGGAAA
CACTTACTGCTGTTCTTGCCAGTCAGATTATGAGCAATGTTCCCGCTGCGCTTCTTTTATCCGGCTTTACAGATAATTAC
CGGGCTTTAATTGTCGGAACCAATATTGGAGGTCTCGGCACTCTGATTGCATCCATGGCAAGCCTTATAAGTTTCAAATA
TATTGCAAAAGAAAACAGGAATCTGAGAGGGAAGTATTTGGGTATATTCACAGCCTCCAATATTATATTCATGATATTCA
TGTTAATATTGTATTTTTTTCTTAGATAA

Upstream 100 bases:

>100_bases
ATAAAAGAAAAACGAGACGACCAAAATATTGACTCTTCTTATTCTGGATGTTTCTGTGATATACTTATATGGGGTCGTAT
CAGACCGGAAAGGAAATATT

Downstream 100 bases:

>100_bases
AAGAATAGATAAAATGTTAAAAAAGCATCTGATGCCTAACATTTGAGATATAAATCCTAACAAAAAGGTATAACAGATGC
TTTTTTTGTGCGCTATACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MLQKLYVFFRKETVLSIAVILALLSMFWVRPDKAYFTYIDFRTLGLLFCLMAIVAGLKAVGVFDILAQKLLMGTSGTVGV
IRLLVLLCFFLSMVITNDVALITFVPFALIIVHKLPKELGNYWLLKIVAMQTIAANLGSMLTPIGNPQNLYLYARAGMSA
AELITLMLPYSATALILLLIWIQVAAAKAPHVCGSEKDKTLLGFSDRKELNMEYLAAYLILFTICLLTVARIIPYQIPLV
LVLIYMLLRNRENISRVDYSLLATFIALFIFIGNLGRIPQFSSFLETIMAGRETLTAVLASQIMSNVPAALLLSGFTDNY
RALIVGTNIGGLGTLIASMASLISFKYIAKENRNLRGKYLGIFTASNIIFMIFMLILYFFLR

Sequences:

>Translated_382_residues
MLQKLYVFFRKETVLSIAVILALLSMFWVRPDKAYFTYIDFRTLGLLFCLMAIVAGLKAVGVFDILAQKLLMGTSGTVGV
IRLLVLLCFFLSMVITNDVALITFVPFALIIVHKLPKELGNYWLLKIVAMQTIAANLGSMLTPIGNPQNLYLYARAGMSA
AELITLMLPYSATALILLLIWIQVAAAKAPHVCGSEKDKTLLGFSDRKELNMEYLAAYLILFTICLLTVARIIPYQIPLV
LVLIYMLLRNRENISRVDYSLLATFIALFIFIGNLGRIPQFSSFLETIMAGRETLTAVLASQIMSNVPAALLLSGFTDNY
RALIVGTNIGGLGTLIASMASLISFKYIAKENRNLRGKYLGIFTASNIIFMIFMLILYFFLR
>Mature_382_residues
MLQKLYVFFRKETVLSIAVILALLSMFWVRPDKAYFTYIDFRTLGLLFCLMAIVAGLKAVGVFDILAQKLLMGTSGTVGV
IRLLVLLCFFLSMVITNDVALITFVPFALIIVHKLPKELGNYWLLKIVAMQTIAANLGSMLTPIGNPQNLYLYARAGMSA
AELITLMLPYSATALILLLIWIQVAAAKAPHVCGSEKDKTLLGFSDRKELNMEYLAAYLILFTICLLTVARIIPYQIPLV
LVLIYMLLRNRENISRVDYSLLATFIALFIFIGNLGRIPQFSSFLETIMAGRETLTAVLASQIMSNVPAALLLSGFTDNY
RALIVGTNIGGLGTLIASMASLISFKYIAKENRNLRGKYLGIFTASNIIFMIFMLILYFFLR

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=327, Percent_Identity=29.9694189602446, Blast_Score=111, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 42543; Mature: 42543

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQKLYVFFRKETVLSIAVILALLSMFWVRPDKAYFTYIDFRTLGLLFCLMAIVAGLKAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
GVFDILAQKLLMGTSGTVGVIRLLVLLCFFLSMVITNDVALITFVPFALIIVHKLPKELG
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
NYWLLKIVAMQTIAANLGSMLTPIGNPQNLYLYARAGMSAAELITLMLPYSATALILLLI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCHHHHHHHHHHH
WIQVAAAKAPHVCGSEKDKTLLGFSDRKELNMEYLAAYLILFTICLLTVARIIPYQIPLV
HHHHHHCCCCCCCCCCCCCEEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLIYMLLRNRENISRVDYSLLATFIALFIFIGNLGRIPQFSSFLETIMAGRETLTAVLA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
SQIMSNVPAALLLSGFTDNYRALIVGTNIGGLGTLIASMASLISFKYIAKENRNLRGKYL
HHHHHHCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
GIFTASNIIFMIFMLILYFFLR
EHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MLQKLYVFFRKETVLSIAVILALLSMFWVRPDKAYFTYIDFRTLGLLFCLMAIVAGLKAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
GVFDILAQKLLMGTSGTVGVIRLLVLLCFFLSMVITNDVALITFVPFALIIVHKLPKELG
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
NYWLLKIVAMQTIAANLGSMLTPIGNPQNLYLYARAGMSAAELITLMLPYSATALILLLI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCHHHHHHHHHHH
WIQVAAAKAPHVCGSEKDKTLLGFSDRKELNMEYLAAYLILFTICLLTVARIIPYQIPLV
HHHHHHCCCCCCCCCCCCCEEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLIYMLLRNRENISRVDYSLLATFIALFIFIGNLGRIPQFSSFLETIMAGRETLTAVLA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
SQIMSNVPAALLLSGFTDNYRALIVGTNIGGLGTLIASMASLISFKYIAKENRNLRGKYL
HHHHHHCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
GIFTASNIIFMIFMLILYFFLR
EHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]