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The map label for this gene is xerD [C]

Identifier: 238925721

GI number: 238925721

Start: 3190949

End: 3191797

Strand: Direct

Name: xerD [C]

Synonym: EUBREC_3378

Alternate gene names: 238925721

Gene position: 3190949-3191797 (Clockwise)

Preceding gene: 238925716

Following gene: 238925722

Centisome position: 92.5

GC content: 41.81

Gene sequence:

>849_bases
ATGTATAAAGATATTTTTGAATCTATCCGCAATGAAGCGGAAAAACGTAACCTGCGTGAAAGAACTATTCAACTGTATTG
CTCTGATGTCAGTTACTTCCTTCGTTGGATTGGAAAAAACGTTTCTGATCTTACGCTTGAAGATGCGGAAAGTTTTCTTA
CAGCCAAACGTCTGGAAGGAAGGTCTCCTGAAACTCACAATCACTATCGGTCTGCAATAAAGTTCTTATATAAAAAGGTG
CTGAAGACTGTCTGGGATGATGACACTGTTCCAGCTATGAAAAGAGAGCGCAATCTTCCTGCTGTTCTGTCCCGCGATGA
AATAAATGCAATCATTGATGCCACTCCGAATCTGAAACATAAAGCGATTATTGCAACTATGTATTCTTCTGGATTACGTG
TATCGGAGGTCGTTCATCTCCATTATGATGACATTTCCCGTACCAACATGACAATTCATGTTCGTGAAACCAAAGGCAGA
ATTGACAGGTATACGATTCTGTCTCAAAAAAATTTAGACCTTCTCACTGAGTATTGGTACAAATGTGGTCGCCCTAAAGA
TATCCTTTTTCCAAGTTCCTGGACCGGTGGATATCTTGATATAACCGGTGTTAACCAGTTCTTTAAGAAAAGTGCTAAAC
TCGCCGGCATTACCCGTCATGTTTCCTCTCATGCGTGCCGTCATAGTTTTGCCAGCCACTTATTCGAAAGTGGCACAGAT
ATAAAATATATCCAGTCACTTCTGGGACATGTTGATCCTCGCTCTACAGATGTTTACCTTCATGTGAGCAACAAGACACT
TCTTGGGATCCGCAGCCCGTTCGACAACCCGGAAGGTGGTGAATCATGA

Upstream 100 bases:

>100_bases
TAACATTTTCCAGTCTCTTCCGCAATCGGAATTATGACGCTAATGCACCTCCGAATAGGTAGATGTAATTATTAACACTA
CTTATTCTGGAGGTTTTATT

Downstream 100 bases:

>100_bases
GTAAGGATTGTACGATTCAGGATGTTTTTCATCGTTTTTATCCATCTTTTGAATCCACACATAGTATTTCTCCCGCTCAG
CGAAAGGCCGCTTATCACAT

Product: putative phage integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MYKDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIGKNVSDLTLEDAESFLTAKRLEGRSPETHNHYRSAIKFLYKKV
LKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDATPNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGR
IDRYTILSQKNLDLLTEYWYKCGRPKDILFPSSWTGGYLDITGVNQFFKKSAKLAGITRHVSSHACRHSFASHLFESGTD
IKYIQSLLGHVDPRSTDVYLHVSNKTLLGIRSPFDNPEGGES

Sequences:

>Translated_282_residues
MYKDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIGKNVSDLTLEDAESFLTAKRLEGRSPETHNHYRSAIKFLYKKV
LKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDATPNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGR
IDRYTILSQKNLDLLTEYWYKCGRPKDILFPSSWTGGYLDITGVNQFFKKSAKLAGITRHVSSHACRHSFASHLFESGTD
IKYIQSLLGHVDPRSTDVYLHVSNKTLLGIRSPFDNPEGGES
>Mature_282_residues
MYKDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIGKNVSDLTLEDAESFLTAKRLEGRSPETHNHYRSAIKFLYKKV
LKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDATPNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGR
IDRYTILSQKNLDLLTEYWYKCGRPKDILFPSSWTGGYLDITGVNQFFKKSAKLAGITRHVSSHACRHSFASHLFESGTD
IKYIQSLLGHVDPRSTDVYLHVSNKTLLGIRSPFDNPEGGES

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=274, Percent_Identity=32.4817518248175, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1790244, Length=189, Percent_Identity=29.6296296296296, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32472; Mature: 32472

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIGKNVSDLTLEDAESFLTAKRLEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
RSPETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDATPNLKH
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEECCCHHHEEEECCCCCCH
KAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLTEYWY
HHHHHHHHHCCCCHHHEEEEECCCCCCCCEEEEEECCCCCCHHEEEECCCCHHHHHHHHH
KCGRPKDILFPSSWTGGYLDITGVNQFFKKSAKLAGITRHVSSHACRHSFASHLFESGTD
HCCCCCCEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IKYIQSLLGHVDPRSTDVYLHVSNKTLLGIRSPFDNPEGGES
HHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MYKDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIGKNVSDLTLEDAESFLTAKRLEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
RSPETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDATPNLKH
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEECCCHHHEEEECCCCCCH
KAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLTEYWY
HHHHHHHHHCCCCHHHEEEEECCCCCCCCEEEEEECCCCCCHHEEEECCCCHHHHHHHHH
KCGRPKDILFPSSWTGGYLDITGVNQFFKKSAKLAGITRHVSSHACRHSFASHLFESGTD
HCCCCCCEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IKYIQSLLGHVDPRSTDVYLHVSNKTLLGIRSPFDNPEGGES
HHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]