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The map label for this gene is intR [C]

Identifier: 238925711

GI number: 238925711

Start: 3183759

End: 3185057

Strand: Reverse

Name: intR [C]

Synonym: EUBREC_3368

Alternate gene names: 238925711

Gene position: 3185057-3183759 (Counterclockwise)

Preceding gene: 238925712

Following gene: 238925707

Centisome position: 92.33

GC content: 44.57

Gene sequence:

>1299_bases
ATGGCAAAAGGTTCTGTAAGAAAGAAAGGCAAGAAATGGTACTACCGCTTCTATGTGGAAGATGCAAGCGGTAATCTGGT
GCAGAAGGAATTTGCAGGTACGGAAAACAAAAGCGAGACGGAAAAGCTGTTGAGGCAGGCAATGGAGGATTATGAAGCCA
AGCGGTTTGTTGCAAAGGCTGAAAACATCACACTCGGAGAGTTGCTTGACCTGTGGGCTGAGGAAGAATTAAAGACAGGC
ACATTGAGTAATGGAACGGTTGGCAATTATCTTCAGACAATTGGGAGAATCAAACAACACCCTATCAGCAAAAGGAAACT
GAAAACGGTGACTTCGGTACACCTGCAGGAGTTTATGGATTTGCTCTCATTTGGAGGCACTGTGGGAGATTTTATATCAA
AAGGATATTCCATTGATTATGTAAGGTCATTTTCAGCAGTATTGCAACAGTCATTCCGGTTTGCGGTATTTCCGAAACAG
TTTATTACCTTCAATCCAATGCAGTATGTGGTGATGAGGCATAAAAAGGAAGAAACAGATTTGTTTGCGGATGAAACAGC
CACAGACAGAGACAAGGTTAAACCGCTTTCCTTTGAAATGTACCGGAAACTGATTGAACAGCTTGGAAAACGAAGTGGGG
ATGCGATTCTTCCGGTTCAGATAGCATACTTTACAGGTCTCAGACTTGGAGAGGTAGCAGGTCTGACATGGCAGGATATC
AACCTTGAAGAACAGTATCTCACTGTACGCAGGAGCATCCGCTACAATGGTGCTACCCATAAGCACGAAATCGGTCCGAC
AAAGTGGAAAAAGATCAGGGTTGTTGACTTTGGCGATACCCTCGCAGATATTTTGAGGAATGCAAAAAAGGAACAGCACA
AAAACCGTTTTCAGTATGGGGAACTCTACCAGCGGAATTTTTACAGAGAAGTAATGGAAAAGAATCGGGTGCATTACGAG
TATTATCATTTGGGAATGACAGAGAATGTGCCGGAAGATTACACCGAAATCTTCTTTGTATGCTTAAGGGAGGATGGTTG
TCTGGAACTTCCGGCAACCATAGAAACAGCCTGCCGGACAGCAGGAAGAAAAGTACCGGAGCTTGAAGGTTTCCATTTCC
ACACACTGAGGCATACCTACACGACAAACCTCTTATCCAACGGGGCTCAGCCTAAGGATGTGCAGGAACTGTTAGGACAC
TCAGACGTGAGTACCACCATGAATGTCTATGCCCATGCTACAAGGGAAGCAAAGCGGACTTCCGCAAGACTTCTTGATAA
AGTGGCAGGCAACGATTAA

Upstream 100 bases:

>100_bases
CTCCGAACCGGTATAGATTAGACAACCGGAGTTATGATATACTTACACGCAGAAAGCATTTCATCAGTTCCGATTGTCGA
TATCGAAAGGAGTAACGATT

Downstream 100 bases:

>100_bases
ACAACTGAATAATGAATTTTCCCTTGTAATTATCCCATAAGGGCAAAAACAAGGGAAAAGGATACATATATAGAATTTTC
AATGGCGGGAAGCCTTGAAA

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MAKGSVRKKGKKWYYRFYVEDASGNLVQKEFAGTENKSETEKLLRQAMEDYEAKRFVAKAENITLGELLDLWAEEELKTG
TLSNGTVGNYLQTIGRIKQHPISKRKLKTVTSVHLQEFMDLLSFGGTVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQ
FITFNPMQYVVMRHKKEETDLFADETATDRDKVKPLSFEMYRKLIEQLGKRSGDAILPVQIAYFTGLRLGEVAGLTWQDI
NLEEQYLTVRRSIRYNGATHKHEIGPTKWKKIRVVDFGDTLADILRNAKKEQHKNRFQYGELYQRNFYREVMEKNRVHYE
YYHLGMTENVPEDYTEIFFVCLREDGCLELPATIETACRTAGRKVPELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGH
SDVSTTMNVYAHATREAKRTSARLLDKVAGND

Sequences:

>Translated_432_residues
MAKGSVRKKGKKWYYRFYVEDASGNLVQKEFAGTENKSETEKLLRQAMEDYEAKRFVAKAENITLGELLDLWAEEELKTG
TLSNGTVGNYLQTIGRIKQHPISKRKLKTVTSVHLQEFMDLLSFGGTVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQ
FITFNPMQYVVMRHKKEETDLFADETATDRDKVKPLSFEMYRKLIEQLGKRSGDAILPVQIAYFTGLRLGEVAGLTWQDI
NLEEQYLTVRRSIRYNGATHKHEIGPTKWKKIRVVDFGDTLADILRNAKKEQHKNRFQYGELYQRNFYREVMEKNRVHYE
YYHLGMTENVPEDYTEIFFVCLREDGCLELPATIETACRTAGRKVPELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGH
SDVSTTMNVYAHATREAKRTSARLLDKVAGND
>Mature_431_residues
AKGSVRKKGKKWYYRFYVEDASGNLVQKEFAGTENKSETEKLLRQAMEDYEAKRFVAKAENITLGELLDLWAEEELKTGT
LSNGTVGNYLQTIGRIKQHPISKRKLKTVTSVHLQEFMDLLSFGGTVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQF
ITFNPMQYVVMRHKKEETDLFADETATDRDKVKPLSFEMYRKLIEQLGKRSGDAILPVQIAYFTGLRLGEVAGLTWQDIN
LEEQYLTVRRSIRYNGATHKHEIGPTKWKKIRVVDFGDTLADILRNAKKEQHKNRFQYGELYQRNFYREVMEKNRVHYEY
YHLGMTENVPEDYTEIFFVCLREDGCLELPATIETACRTAGRKVPELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGHS
DVSTTMNVYAHATREAKRTSARLLDKVAGND

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 49918; Mature: 49787

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGSVRKKGKKWYYRFYVEDASGNLVQKEFAGTENKSETEKLLRQAMEDYEAKRFVAKA
CCCCCCCCCCCEEEEEEEEECCCCCEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ENITLGELLDLWAEEELKTGTLSNGTVGNYLQTIGRIKQHPISKRKLKTVTSVHLQEFMD
CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LLSFGGTVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQFITFNPMQYVVMRHKKEETD
HHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCHHHHEECHHHHHHHHHCCHHHH
LFADETATDRDKVKPLSFEMYRKLIEQLGKRSGDAILPVQIAYFTGLRLGEVAGLTWQDI
HHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCHHHHHCCCEEECC
NLEEQYLTVRRSIRYNGATHKHEIGPTKWKKIRVVDFGDTLADILRNAKKEQHKNRFQYG
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCHHH
ELYQRNFYREVMEKNRVHYEYYHLGMTENVPEDYTEIFFVCLREDGCLELPATIETACRT
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEECCHHHHHHHHH
AGRKVPELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKRT
HCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SARLLDKVAGND
HHHHHHHHCCCC
>Mature Secondary Structure 
AKGSVRKKGKKWYYRFYVEDASGNLVQKEFAGTENKSETEKLLRQAMEDYEAKRFVAKA
CCCCCCCCCCEEEEEEEEECCCCCEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ENITLGELLDLWAEEELKTGTLSNGTVGNYLQTIGRIKQHPISKRKLKTVTSVHLQEFMD
CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LLSFGGTVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQFITFNPMQYVVMRHKKEETD
HHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCHHHHEECHHHHHHHHHCCHHHH
LFADETATDRDKVKPLSFEMYRKLIEQLGKRSGDAILPVQIAYFTGLRLGEVAGLTWQDI
HHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCHHHHHCCCEEECC
NLEEQYLTVRRSIRYNGATHKHEIGPTKWKKIRVVDFGDTLADILRNAKKEQHKNRFQYG
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCHHH
ELYQRNFYREVMEKNRVHYEYYHLGMTENVPEDYTEIFFVCLREDGCLELPATIETACRT
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEECCHHHHHHHHH
AGRKVPELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKRT
HCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SARLLDKVAGND
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]