Click here to switch to the map view.

The map label for this gene is rhaS [H]

Identifier: 238925165

GI number: 238925165

Start: 2697520

End: 2698350

Strand: Reverse

Name: rhaS [H]

Synonym: EUBREC_2819

Alternate gene names: 238925165

Gene position: 2698350-2697520 (Counterclockwise)

Preceding gene: 238925167

Following gene: 238925164

Centisome position: 78.22

GC content: 41.4

Gene sequence:

>831_bases
ATGCAGCAATACACACACGAAAACGTCAGATCAATACCACATCTTCCAATCTACTGCGACAGATACGAGGACTACAGGCA
GTTTTCACCGAGGCACTGGCATGACCATATAGAGATAATCTATGTAGTTTCCGGCTCACTGCAGGTTGTCTGTGGTGAAA
ATGAATATACATTGAAAGAAAATGAATTTTTTGTCATAAATTCAAATAAGATACATGGCACGCAAAGCTATGAAAGAGTC
AGGGTGCTTCTGGTGCAGATACCGTATGCATATCTGGACAGCTACATAGACGATTACGGACAAATAAGGTTTAGAGAGTG
CTATGAGACCGAGAATGGCAGCAGAAAATATGAGCAGATGAAGTCTCTTCTTAAGTCGATAGCGCATATATACCGGAAAA
AGGGCAAGGGCTATGAGCTTCGGCTTATGGCAAAAGTGAACGAATTCCTATATATTTTGTTTACAAATTATTCGTACAAA
GAGATGAATGCGGGAAAAGAATCCAGACAGATAGCGCGCCTTAAGGATGTCCTTAGATATGTGGCGAAAAACTATCAGGA
GCCAATAGCATTAAAGGAGGCGGCAGACATAGCTTCGCTCAATCAGGATTATTTCTGCCGTATGTTCAAAAAATGCATGG
GAGTTACATTTCTTGAGTATGTCAATCAGGTAAGAATCAATCACATACATGAGGAGCTTCTGGCAACTGAGGATTCCATC
ACGGACATACTGGAGCACAATGGATTTACGAATTATAAGGTGTTCAGCCGGATGTTTAAGGCGCAGTTTGGCATGACACC
GAGGGAATTGCGGAAATTACAGGAAAATTAA

Upstream 100 bases:

>100_bases
AACAATTGGATATGCTCAGGCTAATATAGCATGATTAAAGGGTCAAAAGGTATCATAGCATTAAATACGAAGTTTGATTT
AGTAAGTCAGGGAGAAAATT

Downstream 100 bases:

>100_bases
AATGCAATGAATTTGATGTTTTTGTGCTTTTTTTTGTATATTTTAAGGGTACTTAATCGTTATAGTAATGCTGTGGTTAC
GTGTTACACTGAAAGGTGTG

Product: xylan 1,4-beta-xylosidase

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MQQYTHENVRSIPHLPIYCDRYEDYRQFSPRHWHDHIEIIYVVSGSLQVVCGENEYTLKENEFFVINSNKIHGTQSYERV
RVLLVQIPYAYLDSYIDDYGQIRFRECYETENGSRKYEQMKSLLKSIAHIYRKKGKGYELRLMAKVNEFLYILFTNYSYK
EMNAGKESRQIARLKDVLRYVAKNYQEPIALKEAADIASLNQDYFCRMFKKCMGVTFLEYVNQVRINHIHEELLATEDSI
TDILEHNGFTNYKVFSRMFKAQFGMTPRELRKLQEN

Sequences:

>Translated_276_residues
MQQYTHENVRSIPHLPIYCDRYEDYRQFSPRHWHDHIEIIYVVSGSLQVVCGENEYTLKENEFFVINSNKIHGTQSYERV
RVLLVQIPYAYLDSYIDDYGQIRFRECYETENGSRKYEQMKSLLKSIAHIYRKKGKGYELRLMAKVNEFLYILFTNYSYK
EMNAGKESRQIARLKDVLRYVAKNYQEPIALKEAADIASLNQDYFCRMFKKCMGVTFLEYVNQVRINHIHEELLATEDSI
TDILEHNGFTNYKVFSRMFKAQFGMTPRELRKLQEN
>Mature_276_residues
MQQYTHENVRSIPHLPIYCDRYEDYRQFSPRHWHDHIEIIYVVSGSLQVVCGENEYTLKENEFFVINSNKIHGTQSYERV
RVLLVQIPYAYLDSYIDDYGQIRFRECYETENGSRKYEQMKSLLKSIAHIYRKKGKGYELRLMAKVNEFLYILFTNYSYK
EMNAGKESRQIARLKDVLRYVAKNYQEPIALKEAADIASLNQDYFCRMFKKCMGVTFLEYVNQVRINHIHEELLATEDSI
TDILEHNGFTNYKVFSRMFKAQFGMTPRELRKLQEN

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=102, Percent_Identity=31.3725490196078, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33043; Mature: 33043

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQYTHENVRSIPHLPIYCDRYEDYRQFSPRHWHDHIEIIYVVSGSLQVVCGENEYTLKE
CCCCCCHHHHCCCCCCEEECCCHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCCEEEEC
NEFFVINSNKIHGTQSYERVRVLLVQIPYAYLDSYIDDYGQIRFRECYETENGSRKYEQM
CEEEEEECCEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHH
KSLLKSIAHIYRKKGKGYELRLMAKVNEFLYILFTNYSYKEMNAGKESRQIARLKDVLRY
HHHHHHHHHHHHHCCCCEEEEEHEECCCEEEEEEECCCHHHHCCCHHHHHHHHHHHHHHH
VAKNYQEPIALKEAADIASLNQDYFCRMFKKCMGVTFLEYVNQVRINHIHEELLATEDSI
HHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHH
TDILEHNGFTNYKVFSRMFKAQFGMTPRELRKLQEN
HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MQQYTHENVRSIPHLPIYCDRYEDYRQFSPRHWHDHIEIIYVVSGSLQVVCGENEYTLKE
CCCCCCHHHHCCCCCCEEECCCHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCCEEEEC
NEFFVINSNKIHGTQSYERVRVLLVQIPYAYLDSYIDDYGQIRFRECYETENGSRKYEQM
CEEEEEECCEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHH
KSLLKSIAHIYRKKGKGYELRLMAKVNEFLYILFTNYSYKEMNAGKESRQIARLKDVLRY
HHHHHHHHHHHHHCCCCEEEEEHEECCCEEEEEEECCCHHHHCCCHHHHHHHHHHHHHHH
VAKNYQEPIALKEAADIASLNQDYFCRMFKKCMGVTFLEYVNQVRINHIHEELLATEDSI
HHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHH
TDILEHNGFTNYKVFSRMFKAQFGMTPRELRKLQEN
HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA