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The map label for this gene is ykgA [C]

Identifier: 238925161

GI number: 238925161

Start: 2690708

End: 2691448

Strand: Direct

Name: ykgA [C]

Synonym: EUBREC_2815

Alternate gene names: 238925161

Gene position: 2690708-2691448 (Clockwise)

Preceding gene: 238925153

Following gene: 238925166

Centisome position: 78.0

GC content: 41.43

Gene sequence:

>741_bases
ATGGCACTTTCAAAAGAATGGTATGACGCAGAATTTGTTGACAGCGAGAGCGAATCACTGCATCGTGCTCCAAGTATTGA
ATATAGTTTTTATAACGCAGTCAAAACCGGGGATATGGAATATGTAATAAAAAACTGCAAAGAAGATGCATTTATACACC
TTGACGGAACAGGTGTATTGTCCAGAAATACTTTACAGAATATCAAATATCACTTTGTTGTCACAACCGCCATGATCACA
AGATACTGTATTGATGGAGGACTCGAGCCTGAGCAGGCATACCGTCTGAGTGACTTCTATATACTTAAGATGGACAGCTG
CTCCACCGTACGCCAGGTTGCTGACCTGCATCACGAGATGGCAAAGGATTTCACAGGTAAGATGGTGCTGCAGAAGAAAT
CGTCTATCCTCTCAAAGCCTGTTACCCAGTGTGTTGACTATATATACAGCAACATAAAAGAGCGTATCACAATAGCTGAT
CTGGCTGCATACACAGGGCTTTCCGAGAGCTATCTTTCAAGGGTATTCAAGCAGAATCTCGGTGTTTCGATAAGTGATTA
TATAAGGGAAAAGAAAATAGAAAAAGCGACTCACCTGCTCAAATACTCAGATAAGCCGATTATAGATATAGCCAACTACC
TGTCATTTTCATCACAGAGCCACTTTATCCAGATATTCGAGGGTTTTACGGGGCTTACACCAAAGAAATATCGTGACAGG
TACTACAAATCCATGTGGTAG

Upstream 100 bases:

>100_bases
CGGCAATACTATATGGTTGAAATTGTAAAAATATCAGATTCATGTCATAATAATAGAAAGATGACATAAATCTAATATTT
TATTACAAAGGAGAACCTTT

Downstream 100 bases:

>100_bases
CCTGATGCCAAAAGCCTTGTACTACGCACAAAAAATTCCCACGCAAATATGCGTGGGAATTTTATTTAGCTGATACACAA
TGATACAATATCAAACGCTA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MALSKEWYDAEFVDSESESLHRAPSIEYSFYNAVKTGDMEYVIKNCKEDAFIHLDGTGVLSRNTLQNIKYHFVVTTAMIT
RYCIDGGLEPEQAYRLSDFYILKMDSCSTVRQVADLHHEMAKDFTGKMVLQKKSSILSKPVTQCVDYIYSNIKERITIAD
LAAYTGLSESYLSRVFKQNLGVSISDYIREKKIEKATHLLKYSDKPIIDIANYLSFSSQSHFIQIFEGFTGLTPKKYRDR
YYKSMW

Sequences:

>Translated_246_residues
MALSKEWYDAEFVDSESESLHRAPSIEYSFYNAVKTGDMEYVIKNCKEDAFIHLDGTGVLSRNTLQNIKYHFVVTTAMIT
RYCIDGGLEPEQAYRLSDFYILKMDSCSTVRQVADLHHEMAKDFTGKMVLQKKSSILSKPVTQCVDYIYSNIKERITIAD
LAAYTGLSESYLSRVFKQNLGVSISDYIREKKIEKATHLLKYSDKPIIDIANYLSFSSQSHFIQIFEGFTGLTPKKYRDR
YYKSMW
>Mature_245_residues
ALSKEWYDAEFVDSESESLHRAPSIEYSFYNAVKTGDMEYVIKNCKEDAFIHLDGTGVLSRNTLQNIKYHFVVTTAMITR
YCIDGGLEPEQAYRLSDFYILKMDSCSTVRQVADLHHEMAKDFTGKMVLQKKSSILSKPVTQCVDYIYSNIKERITIADL
AAYTGLSESYLSRVFKQNLGVSISDYIREKKIEKATHLLKYSDKPIIDIANYLSFSSQSHFIQIFEGFTGLTPKKYRDRY
YKSMW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=29.5918367346939, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790559, Length=98, Percent_Identity=31.6326530612245, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28439; Mature: 28308

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSKEWYDAEFVDSESESLHRAPSIEYSFYNAVKTGDMEYVIKNCKEDAFIHLDGTGVL
CCCCCCCCCCHHCCCCHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCCCEEEECCCCCC
SRNTLQNIKYHFVVTTAMITRYCIDGGLEPEQAYRLSDFYILKMDSCSTVRQVADLHHEM
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
AKDFTGKMVLQKKSSILSKPVTQCVDYIYSNIKERITIADLAAYTGLSESYLSRVFKQNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
GVSISDYIREKKIEKATHLLKYSDKPIIDIANYLSFSSQSHFIQIFEGFTGLTPKKYRDR
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHH
YYKSMW
HHHHCC
>Mature Secondary Structure 
ALSKEWYDAEFVDSESESLHRAPSIEYSFYNAVKTGDMEYVIKNCKEDAFIHLDGTGVL
CCCCCCCCCHHCCCCHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCCCEEEECCCCCC
SRNTLQNIKYHFVVTTAMITRYCIDGGLEPEQAYRLSDFYILKMDSCSTVRQVADLHHEM
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
AKDFTGKMVLQKKSSILSKPVTQCVDYIYSNIKERITIADLAAYTGLSESYLSRVFKQNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
GVSISDYIREKKIEKATHLLKYSDKPIIDIANYLSFSSQSHFIQIFEGFTGLTPKKYRDR
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHH
YYKSMW
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]