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The map label for this gene is licD [H]

Identifier: 238925004

GI number: 238925004

Start: 2531686

End: 2532534

Strand: Reverse

Name: licD [H]

Synonym: EUBREC_2655

Alternate gene names: 238925004

Gene position: 2532534-2531686 (Counterclockwise)

Preceding gene: 238925005

Following gene: 238925003

Centisome position: 73.41

GC content: 27.8

Gene sequence:

>849_bases
ATGAGTATTAACGATAAAGAGAAAAAAAAACTTCAAAGAGCAATTTTGATTATAGCATGCGAGGTTGCAAGAATATGTAA
AAAAAATGATATTCCATATTTTATTAATGGAGGAACCCAGATTGGTGCAGTACGGCACAATGGATTTATTCCATGGGATG
ATGATTTTGATATTGGCTTTAAAAGAAAAGATTATGAAAAATTTATTAAGGCATGTGATAAAGATTTAAATAAGGATAAA
TTTTTTCTACAGACACCGGAAACAGAAGAATATTATGCCTTTGACTTTGCAAAGTTGCAGCTTAAAGGAACTGAAATAAT
TGAAGATTTTTCTAAAAATGTAAAAATACAACATGGTATATTTGTGGATTTATTTCCTCACGACAATATTCCGGATTGTA
AACTAAAAAGAAAGCTTTTTTTGTTTAAAAATCATTTAATGAAAAATATATTATGGGTAAAATGCGGTTATGGTGAGAAA
AAACATAAGTCTAAGCTGTCATATAAAATGGTAAAATTCGTTTCAAAATTCTTTTCCATTAAACAGATAAAACAATCCAG
AAGTAAGTTATTGGATAAATATAATAATACTAAAACTACCCAGTGTATTATTAGTGATTATCCTAATGATTTAATTATGA
ATTCATGGTTGGATGATTTGCAATTATTCAGGTTCGAAGAAGTTGAGTTTTATGGAATAAAACAATATGATGCATATTTG
AAGTCATTATATGGGGACTATATGAGTTTACCACCTGAATCAGAAAGAATTGTTCATTCGAATTATAAAATAGATTTTGG
ATTATATGATGGATTGTTGGAGGATATGCTATATGGGAATAATATCTAG

Upstream 100 bases:

>100_bases
ATGACTTTTGAAAGTGTTATGGAATATTTCTATTTTAGTTATATTTTATGTATTGTGGCATATTTACCTAAATTAGTTCA
AAACAGAGGTGCAAGCAGAG

Downstream 100 bases:

>100_bases
AGGAAAAGCTTTATGGGCAAAGATTTATTATCAAAAAAGAATAAAAATGAAAGCTGCTGCTTGTGGTGAAAAATTATATG
TAGGCGGAAAATCGTTTGTT

Product: LicD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSINDKEKKKLQRAILIIACEVARICKKNDIPYFINGGTQIGAVRHNGFIPWDDDFDIGFKRKDYEKFIKACDKDLNKDK
FFLQTPETEEYYAFDFAKLQLKGTEIIEDFSKNVKIQHGIFVDLFPHDNIPDCKLKRKLFLFKNHLMKNILWVKCGYGEK
KHKSKLSYKMVKFVSKFFSIKQIKQSRSKLLDKYNNTKTTQCIISDYPNDLIMNSWLDDLQLFRFEEVEFYGIKQYDAYL
KSLYGDYMSLPPESERIVHSNYKIDFGLYDGLLEDMLYGNNI

Sequences:

>Translated_282_residues
MSINDKEKKKLQRAILIIACEVARICKKNDIPYFINGGTQIGAVRHNGFIPWDDDFDIGFKRKDYEKFIKACDKDLNKDK
FFLQTPETEEYYAFDFAKLQLKGTEIIEDFSKNVKIQHGIFVDLFPHDNIPDCKLKRKLFLFKNHLMKNILWVKCGYGEK
KHKSKLSYKMVKFVSKFFSIKQIKQSRSKLLDKYNNTKTTQCIISDYPNDLIMNSWLDDLQLFRFEEVEFYGIKQYDAYL
KSLYGDYMSLPPESERIVHSNYKIDFGLYDGLLEDMLYGNNI
>Mature_281_residues
SINDKEKKKLQRAILIIACEVARICKKNDIPYFINGGTQIGAVRHNGFIPWDDDFDIGFKRKDYEKFIKACDKDLNKDKF
FLQTPETEEYYAFDFAKLQLKGTEIIEDFSKNVKIQHGIFVDLFPHDNIPDCKLKRKLFLFKNHLMKNILWVKCGYGEKK
HKSKLSYKMVKFVSKFFSIKQIKQSRSKLLDKYNNTKTTQCIISDYPNDLIMNSWLDDLQLFRFEEVEFYGIKQYDAYLK
SLYGDYMSLPPESERIVHSNYKIDFGLYDGLLEDMLYGNNI

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 33396; Mature: 33265

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINDKEKKKLQRAILIIACEVARICKKNDIPYFINGGTQIGAVRHNGFIPWDDDFDIGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCC
KRKDYEKFIKACDKDLNKDKFFLQTPETEEYYAFDFAKLQLKGTEIIEDFSKNVKIQHGI
CCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEEEEECCHHHHHHHHHCEEEECCE
FVDLFPHDNIPDCKLKRKLFLFKNHLMKNILWVKCGYGEKKHKSKLSYKMVKFVSKFFSI
EEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
KQIKQSRSKLLDKYNNTKTTQCIISDYPNDLIMNSWLDDLQLFRFEEVEFYGIKQYDAYL
HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCEEEECHHHHHHHH
KSLYGDYMSLPPESERIVHSNYKIDFGLYDGLLEDMLYGNNI
HHHHHHHHCCCCCCCCEEECCEEEEEHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SINDKEKKKLQRAILIIACEVARICKKNDIPYFINGGTQIGAVRHNGFIPWDDDFDIGF
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCC
KRKDYEKFIKACDKDLNKDKFFLQTPETEEYYAFDFAKLQLKGTEIIEDFSKNVKIQHGI
CCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEEEEECCHHHHHHHHHCEEEECCE
FVDLFPHDNIPDCKLKRKLFLFKNHLMKNILWVKCGYGEKKHKSKLSYKMVKFVSKFFSI
EEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
KQIKQSRSKLLDKYNNTKTTQCIISDYPNDLIMNSWLDDLQLFRFEEVEFYGIKQYDAYL
HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCEEEECHHHHHHHH
KSLYGDYMSLPPESERIVHSNYKIDFGLYDGLLEDMLYGNNI
HHHHHHHHCCCCCCCCEEECCEEEEEHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]