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The map label for this gene is psd2 [H]

Identifier: 238924914

GI number: 238924914

Start: 2440106

End: 2440927

Strand: Reverse

Name: psd2 [H]

Synonym: EUBREC_2565

Alternate gene names: 238924914

Gene position: 2440927-2440106 (Counterclockwise)

Preceding gene: 238924915

Following gene: 238924913

Centisome position: 70.76

GC content: 43.92

Gene sequence:

>822_bases
ATGGCAAAAAAATCGTTTGTAGACTGGCTTTACACCACGGCACCTGGGCGTGTGACACTTAAGGTGCTTCTGCATACAGG
TGCACTTAAGCTCGGAGAAATAGTAGCACGCTCCCCGCTGTCTAAGCCGTTTATCAGCCGGTATATAAAGAATAACAATA
TAGACATGTCTGATTTTAAGGGTCAGAAATATAACAGCTTTCAGGACTTTTTCTCCAGAAAGCGTGATGATATTGAGGTG
GACAGGCAGGCTGAGCATCTTATCAGCCCGTGTGACGGCTACCTGAGTGCATACAGGATAAAAAGCAACAACAGCTTTCA
CATCAAGGGCTCATGGTACAAGGTGACGGACCTTGTCACCGACAAAAAAATTGCAAAGGAATTTGTTGGAGGAGACTGCG
TGATACTGCGTCTTTGTGCCAACGATTATCATCATTACTGCTATATAGATGATGGATTTCAGGGCAGGAATCATTTTGTG
AAGGGACTGCTTCACAGTGTACAGCCTATTGCACTGGAAAATGCTCCTGTATATAGGCAAAACAGGCGTATGTGGACTAT
TCTGGATACAGTTAATTTTGGCAAGGTGGCACAGATTGAGATAGGTGCGCTGCTTGTGGGAGGCATAGTCAATGACCACG
AGAATGTTATGATGAGAAAGGGCGCAGAGATGGGGCACTTTGAGCTGATTGGCTCCACAATAGTGCTTTTGTTTAAAAAA
GGTCATATTGACCTGCTTCCGGAAATTAAAGAGTGTATAAAAGGAGACAAAGAAGTACGTGTTATCCAGGGACAGCATAT
CGCAAACAGGACAGTTTTTTAA

Upstream 100 bases:

>100_bases
TCCCTGTAAAGCTCAAAAAGCCATCTCTTTTTGGAGAGGTTCTGCTTGTAGGTATAGGAGCAGTTGAGTTTTGTATTCTC
ATTGCGGAGGTTCTTATTTA

Downstream 100 bases:

>100_bases
CAGAATACTTCCAAAATACAGTCGTATTCCGCTGCTTTTTACAGTAGTGCTCAATTTCAGTGTATACTGGGGCGCGCGTG
CTATTGCAGGCGGTTTTATC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MAKKSFVDWLYTTAPGRVTLKVLLHTGALKLGEIVARSPLSKPFISRYIKNNNIDMSDFKGQKYNSFQDFFSRKRDDIEV
DRQAEHLISPCDGYLSAYRIKSNNSFHIKGSWYKVTDLVTDKKIAKEFVGGDCVILRLCANDYHHYCYIDDGFQGRNHFV
KGLLHSVQPIALENAPVYRQNRRMWTILDTVNFGKVAQIEIGALLVGGIVNDHENVMMRKGAEMGHFELIGSTIVLLFKK
GHIDLLPEIKECIKGDKEVRVIQGQHIANRTVF

Sequences:

>Translated_273_residues
MAKKSFVDWLYTTAPGRVTLKVLLHTGALKLGEIVARSPLSKPFISRYIKNNNIDMSDFKGQKYNSFQDFFSRKRDDIEV
DRQAEHLISPCDGYLSAYRIKSNNSFHIKGSWYKVTDLVTDKKIAKEFVGGDCVILRLCANDYHHYCYIDDGFQGRNHFV
KGLLHSVQPIALENAPVYRQNRRMWTILDTVNFGKVAQIEIGALLVGGIVNDHENVMMRKGAEMGHFELIGSTIVLLFKK
GHIDLLPEIKECIKGDKEVRVIQGQHIANRTVF
>Mature_272_residues
AKKSFVDWLYTTAPGRVTLKVLLHTGALKLGEIVARSPLSKPFISRYIKNNNIDMSDFKGQKYNSFQDFFSRKRDDIEVD
RQAEHLISPCDGYLSAYRIKSNNSFHIKGSWYKVTDLVTDKKIAKEFVGGDCVILRLCANDYHHYCYIDDGFQGRNHFVK
GLLHSVQPIALENAPVYRQNRRMWTILDTVNFGKVAQIEIGALLVGGIVNDHENVMMRKGAEMGHFELIGSTIVLLFKKG
HIDLLPEIKECIKGDKEVRVIQGQHIANRTVF

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790604, Length=242, Percent_Identity=28.9256198347107, Blast_Score=83, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321609, Length=232, Percent_Identity=27.5862068965517, Blast_Score=90, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 31133; Mature: 31002

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKSFVDWLYTTAPGRVTLKVLLHTGALKLGEIVARSPLSKPFISRYIKNNNIDMSDFK
CCCHHHHHHHEECCCCCEEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHCC
GQKYNSFQDFFSRKRDDIEVDRQAEHLISPCDGYLSAYRIKSNNSFHIKGSWYKVTDLVT
CCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHEEEEEECCCEEEEEECEEEEEHHHH
DKKIAKEFVGGDCVILRLCANDYHHYCYIDDGFQGRNHFVKGLLHSVQPIALENAPVYRQ
HHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEECCCCCEEC
NRRMWTILDTVNFGKVAQIEIGALLVGGIVNDHENVMMRKGAEMGHFELIGSTIVLLFKK
CCEEEEEEECCCCCCEEEEEECEEEECCCCCCCHHHHHHCCCCCCHHHHHHHEEEEEEEC
GHIDLLPEIKECIKGDKEVRVIQGQHIANRTVF
CCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
AKKSFVDWLYTTAPGRVTLKVLLHTGALKLGEIVARSPLSKPFISRYIKNNNIDMSDFK
CCHHHHHHHEECCCCCEEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHCC
GQKYNSFQDFFSRKRDDIEVDRQAEHLISPCDGYLSAYRIKSNNSFHIKGSWYKVTDLVT
CCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHEEEEEECCCEEEEEECEEEEEHHHH
DKKIAKEFVGGDCVILRLCANDYHHYCYIDDGFQGRNHFVKGLLHSVQPIALENAPVYRQ
HHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEECCCCCEEC
NRRMWTILDTVNFGKVAQIEIGALLVGGIVNDHENVMMRKGAEMGHFELIGSTIVLLFKK
CCEEEEEEECCCCCCEEEEEECEEEECCCCCCCHHHHHHCCCCCCHHHHHHHEEEEEEEC
GHIDLLPEIKECIKGDKEVRVIQGQHIANRTVF
CCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]