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The map label for this gene is yrvN [H]

Identifier: 238924907

GI number: 238924907

Start: 2430084

End: 2431412

Strand: Reverse

Name: yrvN [H]

Synonym: EUBREC_2558

Alternate gene names: 238924907

Gene position: 2431412-2430084 (Counterclockwise)

Preceding gene: 238924908

Following gene: 238924906

Centisome position: 70.48

GC content: 47.86

Gene sequence:

>1329_bases
ATGGATTTATTTGATTACATGAGAGAACAGAATAAGGAGACAAGCGGTCCCTTAGCTTCTAGGATGCGTCCGACAACACT
TGATGAGGTGGTCGGGCAGCAGCACATAGTTGGGAAGGACAAGCTTTTGTATCGTGCGATTAAAGCCGATAAGCTCAGCT
CCATCATCTTTTACGGGCCGCCGGGCACCGGAAAGACTACTTTGGCAAAGGTCATAGCCCACACTACCAGTGCTGAGTTT
ATGCAGATTAATGCAACCTCTGCAGGCAAGAAGGACATGGAAGAGGTCGTGGAGCAGGCGAAGAATAATCAGGGAATGTA
TCAGAAGAAGACGATACTTTTTATCGACGAGATACATCGCTTCAACAAGGGGCAGCAGGATTATCTGCTTCCGTTTGTGG
AGGATGGCACCATTATTCTGATAGGAGCTACCACTGAGAATCCTTACTTTGAGGTAAACGGTGCTTTGCTTTCACGCTCA
GTTATTTTTGAGCTTAAAAAGCTGTCAACGGATGATATAAAGGTACTTCTTAAGAGAGCACTGACTGACACAGAAAAGGG
CATGGGTGCATACAATGCACAGATAGATGATGATGCACTTGATTTCCTTGCAGATGTGTCAAACGGAGATGCGAGAGCGG
CGCTCACAGCGATAGAGCTTGGTGTACTGACCACGGACAGGTCAGACGATGGCATCATTCATATCACTATCGATGTGGCG
AGCGAATGTATACAAAAAAGAGTTATCTCCTATGATAAGAAGGGGGATAACCATTACGATACCATCTCTGCTTTTATAAA
GAGCATGCGCGGCTCAGACCCGGATGCGGCGGTCTATTATCTGGCGAGGATGCTTTATGCCGGAGAAGATGTGAAATTTA
TCGCAAGACGAATCATGATACTTGCATCGGAGGATATAGGCAATGCAGACCCGATGGCTATGGTTGTAGCGGCATCGGCG
GCGGCAGAGGTCGAGCGCGTTGGAATGCCGGAGGCACAGATTATTCTGTCACAGGCTGTCACATACATGGCATGCGCGCC
AAAGAGCAATGCATCATATAATGCGATATCGGCAGCAATGAGCTGCGTGAAGCAGACTAAGACACCGGCTGTTCCGGCAC
ATCTGCAGGATGCCCATTACGGTGCGGCAGAAAAGCTCGGGCACGGAGTCGGGTACAAATACGCACACGACTATCCAAAT
CACTATGTGAAGCAGCAGTATCTGCCGGATGGCCTTACAGACAGAGTGTTTTACAAACTTACGGATATAGGCTATGAGGC
AAAGATAAAAGCACACATGGATGAGCTTCACAGAGACTGTGATACATGA

Upstream 100 bases:

>100_bases
GTAATTGCCGATTATATCAATGCAAAATGAATTTTTTGCTAAAAGAAATTGCAAAATGATATAACAGATATATCAAATAT
GCATTTCAGGCGGGGATGAT

Downstream 100 bases:

>100_bases
AAGTGCATAGATGAAGCTTGAATAATTGCAAATAGTTGATAATAACATAAATATTTAAAAAATCAGACCAGGAGGATCTT
TAAATGAAAAAGTATACAGA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MDLFDYMREQNKETSGPLASRMRPTTLDEVVGQQHIVGKDKLLYRAIKADKLSSIIFYGPPGTGKTTLAKVIAHTTSAEF
MQINATSAGKKDMEEVVEQAKNNQGMYQKKTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSRS
VIFELKKLSTDDIKVLLKRALTDTEKGMGAYNAQIDDDALDFLADVSNGDARAALTAIELGVLTTDRSDDGIIHITIDVA
SECIQKRVISYDKKGDNHYDTISAFIKSMRGSDPDAAVYYLARMLYAGEDVKFIARRIMILASEDIGNADPMAMVVAASA
AAEVERVGMPEAQIILSQAVTYMACAPKSNASYNAISAAMSCVKQTKTPAVPAHLQDAHYGAAEKLGHGVGYKYAHDYPN
HYVKQQYLPDGLTDRVFYKLTDIGYEAKIKAHMDELHRDCDT

Sequences:

>Translated_442_residues
MDLFDYMREQNKETSGPLASRMRPTTLDEVVGQQHIVGKDKLLYRAIKADKLSSIIFYGPPGTGKTTLAKVIAHTTSAEF
MQINATSAGKKDMEEVVEQAKNNQGMYQKKTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSRS
VIFELKKLSTDDIKVLLKRALTDTEKGMGAYNAQIDDDALDFLADVSNGDARAALTAIELGVLTTDRSDDGIIHITIDVA
SECIQKRVISYDKKGDNHYDTISAFIKSMRGSDPDAAVYYLARMLYAGEDVKFIARRIMILASEDIGNADPMAMVVAASA
AAEVERVGMPEAQIILSQAVTYMACAPKSNASYNAISAAMSCVKQTKTPAVPAHLQDAHYGAAEKLGHGVGYKYAHDYPN
HYVKQQYLPDGLTDRVFYKLTDIGYEAKIKAHMDELHRDCDT
>Mature_442_residues
MDLFDYMREQNKETSGPLASRMRPTTLDEVVGQQHIVGKDKLLYRAIKADKLSSIIFYGPPGTGKTTLAKVIAHTTSAEF
MQINATSAGKKDMEEVVEQAKNNQGMYQKKTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSRS
VIFELKKLSTDDIKVLLKRALTDTEKGMGAYNAQIDDDALDFLADVSNGDARAALTAIELGVLTTDRSDDGIIHITIDVA
SECIQKRVISYDKKGDNHYDTISAFIKSMRGSDPDAAVYYLARMLYAGEDVKFIARRIMILASEDIGNADPMAMVVAASA
AAEVERVGMPEAQIILSQAVTYMACAPKSNASYNAISAAMSCVKQTKTPAVPAHLQDAHYGAAEKLGHGVGYKYAHDYPN
HYVKQQYLPDGLTDRVFYKLTDIGYEAKIKAHMDELHRDCDT

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=437, Percent_Identity=43.0205949656751, Blast_Score=334, Evalue=1e-91,
Organism=Homo sapiens, GI18426904, Length=437, Percent_Identity=38.9016018306636, Blast_Score=284, Evalue=1e-76,
Organism=Escherichia coli, GI1787119, Length=417, Percent_Identity=45.5635491606715, Blast_Score=370, Evalue=1e-103,
Organism=Escherichia coli, GI1788167, Length=128, Percent_Identity=34.375, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=435, Percent_Identity=40.4597701149425, Blast_Score=304, Evalue=2e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=286, Percent_Identity=25.5244755244755, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 48768; Mature: 48768

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFDYMREQNKETSGPLASRMRPTTLDEVVGQQHIVGKDKLLYRAIKADKLSSIIFYGP
CCHHHHHHHCCCCCCCCHHHCCCCCCHHHHCCCHHCCCHHHHHHHHHHHHCCCEEEEECC
PGTGKTTLAKVIAHTTSAEFMQINATSAGKKDMEEVVEQAKNNQGMYQKKTILFIDEIHR
CCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHEEEHHHHHH
FNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSRSVIFELKKLSTDDIKVLLKRA
HCCCCCCCCCEEECCCEEEEEEECCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHH
LTDTEKGMGAYNAQIDDDALDFLADVSNGDARAALTAIELGVLTTDRSDDGIIHITIDVA
HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHEEEEEECCCCCCEEEEEHHHH
SECIQKRVISYDKKGDNHYDTISAFIKSMRGSDPDAAVYYLARMLYAGEDVKFIARRIMI
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
LASEDIGNADPMAMVVAASAAAEVERVGMPEAQIILSQAVTYMACAPKSNASYNAISAAM
EECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHH
SCVKQTKTPAVPAHLQDAHYGAAEKLGHGVGYKYAHDYPNHYVKQQYLPDGLTDRVFYKL
HHHHHCCCCCCCCHHCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
TDIGYEAKIKAHMDELHRDCDT
HHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLFDYMREQNKETSGPLASRMRPTTLDEVVGQQHIVGKDKLLYRAIKADKLSSIIFYGP
CCHHHHHHHCCCCCCCCHHHCCCCCCHHHHCCCHHCCCHHHHHHHHHHHHCCCEEEEECC
PGTGKTTLAKVIAHTTSAEFMQINATSAGKKDMEEVVEQAKNNQGMYQKKTILFIDEIHR
CCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHEEEHHHHHH
FNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALLSRSVIFELKKLSTDDIKVLLKRA
HCCCCCCCCCEEECCCEEEEEEECCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHH
LTDTEKGMGAYNAQIDDDALDFLADVSNGDARAALTAIELGVLTTDRSDDGIIHITIDVA
HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHEEEEEECCCCCCEEEEEHHHH
SECIQKRVISYDKKGDNHYDTISAFIKSMRGSDPDAAVYYLARMLYAGEDVKFIARRIMI
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
LASEDIGNADPMAMVVAASAAAEVERVGMPEAQIILSQAVTYMACAPKSNASYNAISAAM
EECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHH
SCVKQTKTPAVPAHLQDAHYGAAEKLGHGVGYKYAHDYPNHYVKQQYLPDGLTDRVFYKL
HHHHHCCCCCCCCHHCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
TDIGYEAKIKAHMDELHRDCDT
HHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]