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The map label for this gene is yibD [H]

Identifier: 238924869

GI number: 238924869

Start: 2390277

End: 2392448

Strand: Reverse

Name: yibD [H]

Synonym: EUBREC_2520

Alternate gene names: 238924869

Gene position: 2392448-2390277 (Counterclockwise)

Preceding gene: 238924870

Following gene: 238924868

Centisome position: 69.35

GC content: 34.67

Gene sequence:

>2172_bases
ATGAATGGTAAAGACAAGATATCAGTAATTATTCCATGCTACAATGTGCAAAAATATATTATGAGATGCTTCGATTCAAT
TTACAGCCAGACATATGGCTTTGAAAATCTCGAAGTGATACTCATAGATGATTTATCGACAGACAATACATGGTCTATAT
TAGAATCCTTACAAAGACAATACCCGGAGAATGTTATATCTCTTAAAATACAGAAAAAAGGAAAGTGTGGCGGTGCACGT
AATCTGGGAATGGATATCTGCACCGGCAAATATATCACATTTGTGGATGCGGACGATTATGTGCATCCGGATATGCTTAG
GGTGTTGCATGATAGAATGACAGAGGATGATTATGATGTGGCACAGTGTGGTGTATCGTGTTTTAAAGCAGATAAGCCAA
ATGTATTAGAAGTAAATGATTTTGAAATTCAAAGGCTTGATTTGGATAATGTTGATAATAGGAAAAATCTCATTATAGGT
CTGACCGGATTTACTAATGTAACAGCATGGGCAAAGCTATACTCGACCAAATTTATAATAGAACATAATCTAAGATTTAT
AGAAGATGTATATTATGAGGATACATATTTTTCCATGCTTTGTGTGTTACTTGCAAAGAAATATTGTAAGGTGCAATCGA
CATTATACTATTACTTTGAGAATACAGAGGGCATTATACGTTCTGAAATTAGCAATGCAAAGATCCGGGATGCTAAGATT
ATTATGGATCATATAAGGCAGGCTATTCAAAGTAGAAAAGCAGAACTGAGAAATGTAATTGAGCAGTGTCACTGTGAGAT
ACAGTCATTTTTGTTATGGCATCAATATCTTGAGTCATACAATAGAATAGAAAATTTCCTAAAAAAAGAATTGGATATTT
GCAAAGAAGAGTTCTTAAAGAGTGAACCGGATATATTTAATAATCCATATGTGAGGGCTTTTTCAGATGATGCGGTATTG
AAAAGAATGTCAAAGCTGAGGGTAACTGCGAAAAAAATGGATAATGTATGGTTTTTAGATAATGCAATACATATCTGTCT
TGGTATACATGATAAGGATGGAAATTACAGTGTCTGGGCTGGAACAACGATGCAATCCATTGTTGAAAATACAAAAGCAC
CAATAGTTTTTCATATATTACATGATGACACATTGAATGAAATGAATAAAAATAAGCTGAGTCTTATTGCTGATAATAGT
GGAAACGGCATAGAATTTCATCACTTTAATCCAGACATTTTTGGCTCATTGGCTGATTCAATGAATAGATTTACAATTGG
AACAATGTTCAGAATTATGTTGCCCGATATTATGCCGGATTTAAAAAAAATAATATATTTGGACTCTGATTTATTTGTAA
ATACAGATATTGAAGAATTATGGAACCTAAATATAGATAATTACTGTCTGGCGGCTGCTCAGGATTGTTCGACAATAAGA
AATTGGGGAACTCCATACGCTGTAGCAGCAGGGCAGACAAGCCGAGACAGATATTTTAATGCAGGTGTTCTTTGCATGAA
TCTTGACAATATCAGGAAAAATGGAAGCCTGTTTCAACAGGTTATGGATTATCTGAGCGATAATCCACGAACATGGCTTC
CTGATCAGGATGCTTTAAATGCCATATTCAGCGGAAAAACCTTATTGATAGATGAAAAATGGAATTATTTTATTGATGAG
GCAAGAAAAAATAATGAGAAAGCAGAGAAAAAAATATATCATTATGCTGCAACCCTGTTGATGCTGCATACAAATAATGA
AATTGACAGAGCATACTATTTTACAATACTGAGAACCCCATGGGGAGAGCAGATGGAGGATGGCTTATTGTGTAATTCTA
TGGGCAGAATTGTAGATAGAACAGGTATGCTGGAGAAGTTGCTAAAAAAAGCTACTCAAAACAATATACGATTCGTATTC
TATGGTGGAGAGAATAGCTCTATAAGGAAGGCAATGAGGCTATTAAACAGAAATTTCGATAGCTGTGAATGGCATGAGCA
TTTAGAAGAGAATGAGATTATCTGTGATGATAATACGGTCTATATAGTTTCAGCGGATGCGGACGATAGTAATGGACTGG
AAATACTTGCAAATGCCGGATTAGAAAATGGTAAGAATTATTTTATAACACAGAGGTTTTTACATTATACAGAGGGTGGG
TTTGCCCTATAG

Upstream 100 bases:

>100_bases
AAAGGGAATAGTACAAATTAGTTGGAAAAGCTGCAAGGTGCTGTTACATAATTAGAGGAAGATTTAATTTGATTATTTTA
TATATTATGGAGAAAATGTT

Downstream 100 bases:

>100_bases
TTTTTAATATTGAAAAATGGAGATAATATGATTATATTGGCAAAAGAATATACGGATTTTATAAAAAGAATAAAGAACAC
CATCAATAATACGGGAAAGA

Product: Glycosyltransferase Family 2 modular protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 723; Mature: 723

Protein sequence:

>723_residues
MNGKDKISVIIPCYNVQKYIMRCFDSIYSQTYGFENLEVILIDDLSTDNTWSILESLQRQYPENVISLKIQKKGKCGGAR
NLGMDICTGKYITFVDADDYVHPDMLRVLHDRMTEDDYDVAQCGVSCFKADKPNVLEVNDFEIQRLDLDNVDNRKNLIIG
LTGFTNVTAWAKLYSTKFIIEHNLRFIEDVYYEDTYFSMLCVLLAKKYCKVQSTLYYYFENTEGIIRSEISNAKIRDAKI
IMDHIRQAIQSRKAELRNVIEQCHCEIQSFLLWHQYLESYNRIENFLKKELDICKEEFLKSEPDIFNNPYVRAFSDDAVL
KRMSKLRVTAKKMDNVWFLDNAIHICLGIHDKDGNYSVWAGTTMQSIVENTKAPIVFHILHDDTLNEMNKNKLSLIADNS
GNGIEFHHFNPDIFGSLADSMNRFTIGTMFRIMLPDIMPDLKKIIYLDSDLFVNTDIEELWNLNIDNYCLAAAQDCSTIR
NWGTPYAVAAGQTSRDRYFNAGVLCMNLDNIRKNGSLFQQVMDYLSDNPRTWLPDQDALNAIFSGKTLLIDEKWNYFIDE
ARKNNEKAEKKIYHYAATLLMLHTNNEIDRAYYFTILRTPWGEQMEDGLLCNSMGRIVDRTGMLEKLLKKATQNNIRFVF
YGGENSSIRKAMRLLNRNFDSCEWHEHLEENEIICDDNTVYIVSADADDSNGLEILANAGLENGKNYFITQRFLHYTEGG
FAL

Sequences:

>Translated_723_residues
MNGKDKISVIIPCYNVQKYIMRCFDSIYSQTYGFENLEVILIDDLSTDNTWSILESLQRQYPENVISLKIQKKGKCGGAR
NLGMDICTGKYITFVDADDYVHPDMLRVLHDRMTEDDYDVAQCGVSCFKADKPNVLEVNDFEIQRLDLDNVDNRKNLIIG
LTGFTNVTAWAKLYSTKFIIEHNLRFIEDVYYEDTYFSMLCVLLAKKYCKVQSTLYYYFENTEGIIRSEISNAKIRDAKI
IMDHIRQAIQSRKAELRNVIEQCHCEIQSFLLWHQYLESYNRIENFLKKELDICKEEFLKSEPDIFNNPYVRAFSDDAVL
KRMSKLRVTAKKMDNVWFLDNAIHICLGIHDKDGNYSVWAGTTMQSIVENTKAPIVFHILHDDTLNEMNKNKLSLIADNS
GNGIEFHHFNPDIFGSLADSMNRFTIGTMFRIMLPDIMPDLKKIIYLDSDLFVNTDIEELWNLNIDNYCLAAAQDCSTIR
NWGTPYAVAAGQTSRDRYFNAGVLCMNLDNIRKNGSLFQQVMDYLSDNPRTWLPDQDALNAIFSGKTLLIDEKWNYFIDE
ARKNNEKAEKKIYHYAATLLMLHTNNEIDRAYYFTILRTPWGEQMEDGLLCNSMGRIVDRTGMLEKLLKKATQNNIRFVF
YGGENSSIRKAMRLLNRNFDSCEWHEHLEENEIICDDNTVYIVSADADDSNGLEILANAGLENGKNYFITQRFLHYTEGG
FAL
>Mature_723_residues
MNGKDKISVIIPCYNVQKYIMRCFDSIYSQTYGFENLEVILIDDLSTDNTWSILESLQRQYPENVISLKIQKKGKCGGAR
NLGMDICTGKYITFVDADDYVHPDMLRVLHDRMTEDDYDVAQCGVSCFKADKPNVLEVNDFEIQRLDLDNVDNRKNLIIG
LTGFTNVTAWAKLYSTKFIIEHNLRFIEDVYYEDTYFSMLCVLLAKKYCKVQSTLYYYFENTEGIIRSEISNAKIRDAKI
IMDHIRQAIQSRKAELRNVIEQCHCEIQSFLLWHQYLESYNRIENFLKKELDICKEEFLKSEPDIFNNPYVRAFSDDAVL
KRMSKLRVTAKKMDNVWFLDNAIHICLGIHDKDGNYSVWAGTTMQSIVENTKAPIVFHILHDDTLNEMNKNKLSLIADNS
GNGIEFHHFNPDIFGSLADSMNRFTIGTMFRIMLPDIMPDLKKIIYLDSDLFVNTDIEELWNLNIDNYCLAAAQDCSTIR
NWGTPYAVAAGQTSRDRYFNAGVLCMNLDNIRKNGSLFQQVMDYLSDNPRTWLPDQDALNAIFSGKTLLIDEKWNYFIDE
ARKNNEKAEKKIYHYAATLLMLHTNNEIDRAYYFTILRTPWGEQMEDGLLCNSMGRIVDRTGMLEKLLKKATQNNIRFVF
YGGENSSIRKAMRLLNRNFDSCEWHEHLEENEIICDDNTVYIVSADADDSNGLEILANAGLENGKNYFITQRFLHYTEGG
FAL

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=224, Percent_Identity=32.1428571428571, Blast_Score=115, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 83808; Mature: 83808

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKDKISVIIPCYNVQKYIMRCFDSIYSQTYGFENLEVILIDDLSTDNTWSILESLQRQ
CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH
YPENVISLKIQKKGKCGGARNLGMDICTGKYITFVDADDYVHPDMLRVLHDRMTEDDYDV
CCCCEEEEEEEECCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCCHH
AQCGVSCFKADKPNVLEVNDFEIQRLDLDNVDNRKNLIIGLTGFTNVTAWAKLYSTKFII
HHHCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHEEEEE
EHNLRFIEDVYYEDTYFSMLCVLLAKKYCKVQSTLYYYFENTEGIIRSEISNAKIRDAKI
ECCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHCCCCCCHHHHH
IMDHIRQAIQSRKAELRNVIEQCHCEIQSFLLWHQYLESYNRIENFLKKELDICKEEFLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SEPDIFNNPYVRAFSDDAVLKRMSKLRVTAKKMDNVWFLDNAIHICLGIHDKDGNYSVWA
CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEECCEEEEEEEEEECCCCEEEEE
GTTMQSIVENTKAPIVFHILHDDTLNEMNKNKLSLIADNSGNGIEFHHFNPDIFGSLADS
CCHHHHHHHCCCCCEEEEEECCCHHHHCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHH
MNRFTIGTMFRIMLPDIMPDLKKIIYLDSDLFVNTDIEELWNLNIDNYCLAAAQDCSTIR
HCHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEECCHHHHHCCCCCCEEHHHHHHHHHHH
NWGTPYAVAAGQTSRDRYFNAGVLCMNLDNIRKNGSLFQQVMDYLSDNPRTWLPDQDALN
HCCCCEEEECCCCCCCCEECCCEEEEEHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHH
AIFSGKTLLIDEKWNYFIDEARKNNEKAEKKIYHYAATLLMLHTNNEIDRAYYFTILRTP
HHHCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEEECC
WGEQMEDGLLCNSMGRIVDRTGMLEKLLKKATQNNIRFVFYGGENSSIRKAMRLLNRNFD
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCC
SCEWHEHLEENEIICDDNTVYIVSADADDSNGLEILANAGLENGKNYFITQRFLHYTEGG
CCHHHHHCCCCCEEECCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHCCCC
FAL
CCC
>Mature Secondary Structure
MNGKDKISVIIPCYNVQKYIMRCFDSIYSQTYGFENLEVILIDDLSTDNTWSILESLQRQ
CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH
YPENVISLKIQKKGKCGGARNLGMDICTGKYITFVDADDYVHPDMLRVLHDRMTEDDYDV
CCCCEEEEEEEECCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCCHH
AQCGVSCFKADKPNVLEVNDFEIQRLDLDNVDNRKNLIIGLTGFTNVTAWAKLYSTKFII
HHHCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHEEEEE
EHNLRFIEDVYYEDTYFSMLCVLLAKKYCKVQSTLYYYFENTEGIIRSEISNAKIRDAKI
ECCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHCCCCCCHHHHH
IMDHIRQAIQSRKAELRNVIEQCHCEIQSFLLWHQYLESYNRIENFLKKELDICKEEFLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SEPDIFNNPYVRAFSDDAVLKRMSKLRVTAKKMDNVWFLDNAIHICLGIHDKDGNYSVWA
CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEECCEEEEEEEEEECCCCEEEEE
GTTMQSIVENTKAPIVFHILHDDTLNEMNKNKLSLIADNSGNGIEFHHFNPDIFGSLADS
CCHHHHHHHCCCCCEEEEEECCCHHHHCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHH
MNRFTIGTMFRIMLPDIMPDLKKIIYLDSDLFVNTDIEELWNLNIDNYCLAAAQDCSTIR
HCHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEECCHHHHHCCCCCCEEHHHHHHHHHHH
NWGTPYAVAAGQTSRDRYFNAGVLCMNLDNIRKNGSLFQQVMDYLSDNPRTWLPDQDALN
HCCCCEEEECCCCCCCCEECCCEEEEEHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHH
AIFSGKTLLIDEKWNYFIDEARKNNEKAEKKIYHYAATLLMLHTNNEIDRAYYFTILRTP
HHHCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEEECC
WGEQMEDGLLCNSMGRIVDRTGMLEKLLKKATQNNIRFVFYGGENSSIRKAMRLLNRNFD
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCC
SCEWHEHLEENEIICDDNTVYIVSADADDSNGLEILANAGLENGKNYFITQRFLHYTEGG
CCHHHHHCCCCCEEECCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHCCCC
FAL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]