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The map label for this gene is xerC [H]

Identifier: 238924066

GI number: 238924066

Start: 1583327

End: 1584376

Strand: Direct

Name: xerC [H]

Synonym: EUBREC_1704

Alternate gene names: 238924066

Gene position: 1583327-1584376 (Clockwise)

Preceding gene: 238924065

Following gene: 238924067

Centisome position: 45.9

GC content: 42.29

Gene sequence:

>1050_bases
ATGAAAGACAAAGCTTATTACGAAGACGTAAATATAAAAAATGAATTAAAGCTCAGAGACATGATACAGAAGCTTCCGAA
GTTCTGTATGGATTTTTTTATCGGAATAGATGCGGATAAGTCCTCAAGAACCAAGATAGCGTATGCATATGATCTACAGA
CCTTTTTCGAGTACATGAAGAGTGCCAATCCATCGCTTAAGAAATATGATATAAGGGATTACCCTATATCTCTGTTAGAT
CAGATCAGTCCTTCAGATATTGAGGAATATCTGTTTTATCTAAAGTATTATGAGAAGGATGGCGTCGTACACACCAATGA
CGAGAGAGGCATTAAGCGAAAGCTTGCATCACTGCGCACTTTTTATAATTTTTATTTCAGGAAAGAGTTTATAGATACCA
ATCCTGCGAGCAAGGTAACCCTTCCCAAAATACATGAGAAGAATATCATCCGTCTTGATACTGATGAGGTCGCACAGCTT
CTCGATGAGGTTGAGTCAGGAGACAGTCTGTCCAAGAACCAGCAGCGTTTCCATGAGAAAACAAAGGTTCGTGACCTTGC
ACTTATGACACTGCTTCTTGGAACAGGTATCCGTGTATCTGAGTGCGTGGGGCTGGATATGGATGATGTAGATTTCAAAA
ACAACGGAATCAAGGTGCACCGAAAGGGTGGTGCTGATGTGATTGTTTATTTTGGTGATGAGGTACGTGATGCACTTCTT
TCGTACTGGGAGGAGAGAAGCATAATTACACCTGCCGAGGGGCATGCTAATGCGCTTTTTCTCTCTTTACAGAGGAAGCG
TATATCTGTACGCTCTGTTGAGAATCTGGTAAAAAAGTATTCGAGACTCGTAACAACCGTTAAGAATATTACTCCTCATA
AGCTTCGCAGTACATATGGCACCACACTTTATCAGGAAACAGGTGATATCTATCTTGTGGCGGATGTTCTAGGGCACAAG
GATGTAAATACCACACGTAAGCATTATGCAGCCCAGGAGGACAGCAGGCGTCGTGCGGCAGCCAGGGTAGTACATCTGAG
GGAGGATTGA

Upstream 100 bases:

>100_bases
GAAGACGAAGGATATAGCTGCACTGGTCAAGGAGCGTATAGAGGAGAAAATCAAAGAAATACTTGGTTAGAGTCAACTTT
GATTATTATATAGTATTATT

Downstream 100 bases:

>100_bases
TTATATGTCTGATAATATAATCACAATTACAGATTTTATGGACCCCAATCTGGATGTGTATGCCAGATTGACGGAGAATC
AGCTTTTAAACAGAGCTAAT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MKDKAYYEDVNIKNELKLRDMIQKLPKFCMDFFIGIDADKSSRTKIAYAYDLQTFFEYMKSANPSLKKYDIRDYPISLLD
QISPSDIEEYLFYLKYYEKDGVVHTNDERGIKRKLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNIIRLDTDEVAQL
LDEVESGDSLSKNQQRFHEKTKVRDLALMTLLLGTGIRVSECVGLDMDDVDFKNNGIKVHRKGGADVIVYFGDEVRDALL
SYWEERSIITPAEGHANALFLSLQRKRISVRSVENLVKKYSRLVTTVKNITPHKLRSTYGTTLYQETGDIYLVADVLGHK
DVNTTRKHYAAQEDSRRRAAARVVHLRED

Sequences:

>Translated_349_residues
MKDKAYYEDVNIKNELKLRDMIQKLPKFCMDFFIGIDADKSSRTKIAYAYDLQTFFEYMKSANPSLKKYDIRDYPISLLD
QISPSDIEEYLFYLKYYEKDGVVHTNDERGIKRKLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNIIRLDTDEVAQL
LDEVESGDSLSKNQQRFHEKTKVRDLALMTLLLGTGIRVSECVGLDMDDVDFKNNGIKVHRKGGADVIVYFGDEVRDALL
SYWEERSIITPAEGHANALFLSLQRKRISVRSVENLVKKYSRLVTTVKNITPHKLRSTYGTTLYQETGDIYLVADVLGHK
DVNTTRKHYAAQEDSRRRAAARVVHLRED
>Mature_349_residues
MKDKAYYEDVNIKNELKLRDMIQKLPKFCMDFFIGIDADKSSRTKIAYAYDLQTFFEYMKSANPSLKKYDIRDYPISLLD
QISPSDIEEYLFYLKYYEKDGVVHTNDERGIKRKLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNIIRLDTDEVAQL
LDEVESGDSLSKNQQRFHEKTKVRDLALMTLLLGTGIRVSECVGLDMDDVDFKNNGIKVHRKGGADVIVYFGDEVRDALL
SYWEERSIITPAEGHANALFLSLQRKRISVRSVENLVKKYSRLVTTVKNITPHKLRSTYGTTLYQETGDIYLVADVLGHK
DVNTTRKHYAAQEDSRRRAAARVVHLRED

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=213, Percent_Identity=29.5774647887324, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789261, Length=215, Percent_Identity=26.5116279069767, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790768, Length=152, Percent_Identity=27.6315789473684, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40543; Mature: 40543

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKAYYEDVNIKNELKLRDMIQKLPKFCMDFFIGIDADKSSRTKIAYAYDLQTFFEYMK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHH
SANPSLKKYDIRDYPISLLDQISPSDIEEYLFYLKYYEKDGVVHTNDERGIKRKLASLRT
CCCCCCEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHH
FYNFYFRKEFIDTNPASKVTLPKIHEKNIIRLDTDEVAQLLDEVESGDSLSKNQQRFHEK
HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCHHHHHHHHH
TKVRDLALMTLLLGTGIRVSECVGLDMDDVDFKNNGIKVHRKGGADVIVYFGDEVRDALL
HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHH
SYWEERSIITPAEGHANALFLSLQRKRISVRSVENLVKKYSRLVTTVKNITPHKLRSTYG
HHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
TTLYQETGDIYLVADVLGHKDVNTTRKHYAAQEDSRRRAAARVVHLRED
CCCEECCCCEEEEEEHHCCCCCCHHHHHHHCCHHHHHHHHHHHHEECCC
>Mature Secondary Structure
MKDKAYYEDVNIKNELKLRDMIQKLPKFCMDFFIGIDADKSSRTKIAYAYDLQTFFEYMK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHH
SANPSLKKYDIRDYPISLLDQISPSDIEEYLFYLKYYEKDGVVHTNDERGIKRKLASLRT
CCCCCCEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHH
FYNFYFRKEFIDTNPASKVTLPKIHEKNIIRLDTDEVAQLLDEVESGDSLSKNQQRFHEK
HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCHHHHHHHHH
TKVRDLALMTLLLGTGIRVSECVGLDMDDVDFKNNGIKVHRKGGADVIVYFGDEVRDALL
HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHH
SYWEERSIITPAEGHANALFLSLQRKRISVRSVENLVKKYSRLVTTVKNITPHKLRSTYG
HHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
TTLYQETGDIYLVADVLGHKDVNTTRKHYAAQEDSRRRAAARVVHLRED
CCCEECCCCEEEEEEHHCCCCCCHHHHHHHCCHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA