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The map label for this gene is rnfD [H]

Identifier: 238924004

GI number: 238924004

Start: 1530527

End: 1531423

Strand: Direct

Name: rnfD [H]

Synonym: EUBREC_1642

Alternate gene names: 238924004

Gene position: 1530527-1531423 (Clockwise)

Preceding gene: 238924003

Following gene: 238924005

Centisome position: 44.37

GC content: 41.03

Gene sequence:

>897_bases
ATGCTTTATGTCATTATAGCATTACTCCCGGCAAGTCTTTTTGGTATTTACAATTTTGGATTTAGAGCACTTTTTATCAT
TCTGCTTACCATCGCATCGTGTGTGGCATCAGAATGGGTGTTTGACTACATAGTTAAGAAAAAGAGCACAATTACAGACC
TTAGTGCGGTAGTTACAGGACTGCTTTTAGCACTAAATCTTCCGGTTTCACTTCCATGGTGGGAGGCTGTACTCGGTGGA
GTATTTGCAATCATCATTGTCAAGTGTATGTTCGGAGGACTTGGACAGAACTTTATGAACCCGGCACTTGGTGGAAGATG
CTTCCTTCTCATCGCATTTGCTGCTGATATGACTAATTTCAATGTCACAAGAAACGGCGTGGATGTATACTCAGGAGCAA
CACCACTTGCGCTCATCAAAAATGAGGGACTTTCAAGTGTTAATGTAAGAGATATGCTTATAGGAAATACTGCAGGAACA
ATCGGTGAGACATCAGTTATAGCTATTTTAATAGGTGCTATCATCATGATTTTACTTGGAGTCATTGATTTAAAGATTCC
TGCATCTTACATTATTACATTTGCTGTTTTCATGTTCCTTTTCGGAGCACAGCAGTTTGATATCAACTATGTTGTTGCAG
AGCTCTGCGGTGGTGGACTGATGCTCGGTGCATTTTTCATGGCAACCGATTATGTCACAAGCCCGATTACGCCGATGGGA
AAGATAATATTCGGTATCTGCTGTGGTATATTGACAGGAGTATTCCGTTGCTTCGGTGCCAATGCAGAGGGTGTTTCCTT
TGCTATCATCTTAAGCAACTGCCTTGTTCCTATTATTGAGAAGGTTTCTATCCCAAGAGCCTTTGGTATGGTAAAGGAGG
CAAAGAAGAATGAATAA

Upstream 100 bases:

>100_bases
GGCCAGCAAAAAATAAAGAAAGAGGTGGATTAAAGTGAGTGATTTATATCATGTTTCATCATCACCACATGTACGTGCCA
AGGATTCCACTGACAGAATA

Downstream 100 bases:

>100_bases
ACGTATTGTACATGACGCTTTGATTTTAACTGCCTTTACTCTGGTGCTTGGTTTTATTCTTGCCCTGGTTCAGGGAATCA
CGGCAGATCCTATCGACAAG

Product: NADH:ubiquinone oxidoreductase, Na translocating, B subunit

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MLYVIIALLPASLFGIYNFGFRALFIILLTIASCVASEWVFDYIVKKKSTITDLSAVVTGLLLALNLPVSLPWWEAVLGG
VFAIIIVKCMFGGLGQNFMNPALGGRCFLLIAFAADMTNFNVTRNGVDVYSGATPLALIKNEGLSSVNVRDMLIGNTAGT
IGETSVIAILIGAIIMILLGVIDLKIPASYIITFAVFMFLFGAQQFDINYVVAELCGGGLMLGAFFMATDYVTSPITPMG
KIIFGICCGILTGVFRCFGANAEGVSFAIILSNCLVPIIEKVSIPRAFGMVKEAKKNE

Sequences:

>Translated_298_residues
MLYVIIALLPASLFGIYNFGFRALFIILLTIASCVASEWVFDYIVKKKSTITDLSAVVTGLLLALNLPVSLPWWEAVLGG
VFAIIIVKCMFGGLGQNFMNPALGGRCFLLIAFAADMTNFNVTRNGVDVYSGATPLALIKNEGLSSVNVRDMLIGNTAGT
IGETSVIAILIGAIIMILLGVIDLKIPASYIITFAVFMFLFGAQQFDINYVVAELCGGGLMLGAFFMATDYVTSPITPMG
KIIFGICCGILTGVFRCFGANAEGVSFAIILSNCLVPIIEKVSIPRAFGMVKEAKKNE
>Mature_298_residues
MLYVIIALLPASLFGIYNFGFRALFIILLTIASCVASEWVFDYIVKKKSTITDLSAVVTGLLLALNLPVSLPWWEAVLGG
VFAIIIVKCMFGGLGQNFMNPALGGRCFLLIAFAADMTNFNVTRNGVDVYSGATPLALIKNEGLSSVNVRDMLIGNTAGT
IGETSVIAILIGAIIMILLGVIDLKIPASYIITFAVFMFLFGAQQFDINYVVAELCGGGLMLGAFFMATDYVTSPITPMG
KIIFGICCGILTGVFRCFGANAEGVSFAIILSNCLVPIIEKVSIPRAFGMVKEAKKNE

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=333, Percent_Identity=33.9339339339339, Blast_Score=162, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 31850; Mature: 31850

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYVIIALLPASLFGIYNFGFRALFIILLTIASCVASEWVFDYIVKKKSTITDLSAVVTG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LLLALNLPVSLPWWEAVLGGVFAIIIVKCMFGGLGQNFMNPALGGRCFLLIAFAADMTNF
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCC
NVTRNGVDVYSGATPLALIKNEGLSSVNVRDMLIGNTAGTIGETSVIAILIGAIIMILLG
CEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VIDLKIPASYIITFAVFMFLFGAQQFDINYVVAELCGGGLMLGAFFMATDYVTSPITPMG
HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
KIIFGICCGILTGVFRCFGANAEGVSFAIILSNCLVPIIEKVSIPRAFGMVKEAKKNE
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLYVIIALLPASLFGIYNFGFRALFIILLTIASCVASEWVFDYIVKKKSTITDLSAVVTG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LLLALNLPVSLPWWEAVLGGVFAIIIVKCMFGGLGQNFMNPALGGRCFLLIAFAADMTNF
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCC
NVTRNGVDVYSGATPLALIKNEGLSSVNVRDMLIGNTAGTIGETSVIAILIGAIIMILLG
CEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VIDLKIPASYIITFAVFMFLFGAQQFDINYVVAELCGGGLMLGAFFMATDYVTSPITPMG
HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
KIIFGICCGILTGVFRCFGANAEGVSFAIILSNCLVPIIEKVSIPRAFGMVKEAKKNE
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA