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The map label for this gene is rnfC [H]

Identifier: 238924003

GI number: 238924003

Start: 1529111

End: 1530442

Strand: Direct

Name: rnfC [H]

Synonym: EUBREC_1641

Alternate gene names: 238924003

Gene position: 1529111-1530442 (Clockwise)

Preceding gene: 238924001

Following gene: 238924004

Centisome position: 44.33

GC content: 46.32

Gene sequence:

>1332_bases
ATGGGTCATAAAACGTTTATTGGCGGTGTTCATCCATATGATGGCAAAGAGTTGTCTAAGGATTCACCAATTAAAGAAGT
TTTGCCCAAGGGCGACATGGTATATCCGGTTTCGCAGCATATCGGCGCACCGGCTAAGCCTGTTGTTGCCGTAGGTGACA
CTGTGTTGAAGGGACAGATGATAGCAGAGGCCGGTGGCTTTGTTTCATCACCTATCTATTCATCAGTGTCAGGAAAAGTT
AAGGCTATTGAGAAGCGACGTGTGGCGGTCGGCGATATGGTTGACAGTATTGTTATCGAAAATGATGGCATGTTTACTGA
GACAACATATGAGAGCGTCGAGGATGTCACTGCGCTTTCAAAGGAAGAAATCATCGAGAAGGTCAAGAATGCGGGTGTTG
TCGGCATGGGCGGTGCCGGTTTCCCTACACATGTTAAGCTTTCTCCAAAGGAGCCGGACAAGATTGAGTATATTATCGCA
AACTGCGCAGAGTGTGAGCCTTACCTCACATCTGACTACAGACGTATGCTTGAGAATCCTGAGGAATTAATTGGCGGCAT
GAAGATCATACTTCAGCTTTTTGACAATGCAAAGGGGATCCTTGGTATAGAGGATAATAAGCCTGACTGTATCGAAAAGC
TCACAGAGCTCACGAAGGATGAGCCACGTATTGAGGTTTGTCCGCTTATGACAAAGTACCCACAGGGTGGTGAGAGACAG
CTCATCTATGCTACAACCGGCAGAGCCATCAATTCTAAGATGCTCCCTGCTGATGCAGGCTGTATCGTTGATAATGTAGA
GACAATCATTGCTGTCTACAATGCCGTAAAGAATGGACAGCCAGTCCTTAAGCGTATTTCAACAGTTACAGGAGATGCTG
TGAAGAATCCTTCCAATATTTTATACAGCATCGGTACCTCATATCAGGAGCTGGTTGATGCTGCAGGTGGCTTTAAGAGC
CAGCCGGAGAAGATTATATCAGGCGGTCCTATGATGGGCTTTGCCATGTTTAGTCTTGATATCCCTACTACAAAGACCTC
TTCATCAATACTGTGCTTCACACATGATGAGGTGGCAGCATTTGAGCCACAGGCCTGCATTAACTGCGGTCGTTGCGTTG
AGGCATGTCCTGAGCAGCTTATTCCAAGCCGTCTTGCTAAGTTTGGTTTGCGTGGACAGATGGATGAGTTTGAGAAGTGG
CACGGACTTGAGTGTATTGAGTGTGGAAGCTGTTCATTTGCATGTCCGTCAAGGAGACAGGTGGCTCAGCCTATTAAGAC
AATGAAGAAGCTTGTTCTCGCTGAAAAGAGAAAACAGGCCAGCAAAAAATAA

Upstream 100 bases:

>100_bases
TAATATACTATTTAACTAAAAATCATAAGTGGTATAATAGGAATAGTAATGTGCAATAGCATTTCCACGTTATTAATCTA
AAAGAAAGAGGGGCACAAAA

Downstream 100 bases:

>100_bases
AGAAAGAGGTGGATTAAAGTGAGTGATTTATATCATGTTTCATCATCACCACATGTACGTGCCAAGGATTCCACTGACAG
AATAATGCTTTATGTCATTA

Product: rnfC/nqrF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MGHKTFIGGVHPYDGKELSKDSPIKEVLPKGDMVYPVSQHIGAPAKPVVAVGDTVLKGQMIAEAGGFVSSPIYSSVSGKV
KAIEKRRVAVGDMVDSIVIENDGMFTETTYESVEDVTALSKEEIIEKVKNAGVVGMGGAGFPTHVKLSPKEPDKIEYIIA
NCAECEPYLTSDYRRMLENPEELIGGMKIILQLFDNAKGILGIEDNKPDCIEKLTELTKDEPRIEVCPLMTKYPQGGERQ
LIYATTGRAINSKMLPADAGCIVDNVETIIAVYNAVKNGQPVLKRISTVTGDAVKNPSNILYSIGTSYQELVDAAGGFKS
QPEKIISGGPMMGFAMFSLDIPTTKTSSSILCFTHDEVAAFEPQACINCGRCVEACPEQLIPSRLAKFGLRGQMDEFEKW
HGLECIECGSCSFACPSRRQVAQPIKTMKKLVLAEKRKQASKK

Sequences:

>Translated_443_residues
MGHKTFIGGVHPYDGKELSKDSPIKEVLPKGDMVYPVSQHIGAPAKPVVAVGDTVLKGQMIAEAGGFVSSPIYSSVSGKV
KAIEKRRVAVGDMVDSIVIENDGMFTETTYESVEDVTALSKEEIIEKVKNAGVVGMGGAGFPTHVKLSPKEPDKIEYIIA
NCAECEPYLTSDYRRMLENPEELIGGMKIILQLFDNAKGILGIEDNKPDCIEKLTELTKDEPRIEVCPLMTKYPQGGERQ
LIYATTGRAINSKMLPADAGCIVDNVETIIAVYNAVKNGQPVLKRISTVTGDAVKNPSNILYSIGTSYQELVDAAGGFKS
QPEKIISGGPMMGFAMFSLDIPTTKTSSSILCFTHDEVAAFEPQACINCGRCVEACPEQLIPSRLAKFGLRGQMDEFEKW
HGLECIECGSCSFACPSRRQVAQPIKTMKKLVLAEKRKQASKK
>Mature_442_residues
GHKTFIGGVHPYDGKELSKDSPIKEVLPKGDMVYPVSQHIGAPAKPVVAVGDTVLKGQMIAEAGGFVSSPIYSSVSGKVK
AIEKRRVAVGDMVDSIVIENDGMFTETTYESVEDVTALSKEEIIEKVKNAGVVGMGGAGFPTHVKLSPKEPDKIEYIIAN
CAECEPYLTSDYRRMLENPEELIGGMKIILQLFDNAKGILGIEDNKPDCIEKLTELTKDEPRIEVCPLMTKYPQGGERQL
IYATTGRAINSKMLPADAGCIVDNVETIIAVYNAVKNGQPVLKRISTVTGDAVKNPSNILYSIGTSYQELVDAAGGFKSQ
PEKIISGGPMMGFAMFSLDIPTTKTSSSILCFTHDEVAAFEPQACINCGRCVEACPEQLIPSRLAKFGLRGQMDEFEKWH
GLECIECGSCSFACPSRRQVAQPIKTMKKLVLAEKRKQASKK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=444, Percent_Identity=36.7117117117117, Blast_Score=285, Evalue=3e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 48081; Mature: 47950

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHKTFIGGVHPYDGKELSKDSPIKEVLPKGDMVYPVSQHIGAPAKPVVAVGDTVLKGQM
CCCCCEECCCCCCCCCCCCCCCCHHHHCCCCCEEEEHHHHCCCCCCCEEEECCHHHHCHH
IAEAGGFVSSPIYSSVSGKVKAIEKRRVAVGDMVDSIVIENDGMFTETTYESVEDVTALS
HHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHHHH
KEEIIEKVKNAGVVGMGGAGFPTHVKLSPKEPDKIEYIIANCAECEPYLTSDYRRMLENP
HHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCH
EELIGGMKIILQLFDNAKGILGIEDNKPDCIEKLTELTKDEPRIEVCPLMTKYPQGGERQ
HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCEEECCCHHCCCCCCCEE
LIYATTGRAINSKMLPADAGCIVDNVETIIAVYNAVKNGQPVLKRISTVTGDAVKNPSNI
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHCCCHHH
LYSIGTSYQELVDAAGGFKSQPEKIISGGPMMGFAMFSLDIPTTKTSSSILCFTHDEVAA
EEECCCCHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEEEECCCCCCCCEEEEEECCCHHH
FEPQACINCGRCVEACPEQLIPSRLAKFGLRGQMDEFEKWHGLECIECGSCSFACPSRRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEECCCCCCCCCCHHH
VAQPIKTMKKLVLAEKRKQASKK
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GHKTFIGGVHPYDGKELSKDSPIKEVLPKGDMVYPVSQHIGAPAKPVVAVGDTVLKGQM
CCCCEECCCCCCCCCCCCCCCCHHHHCCCCCEEEEHHHHCCCCCCCEEEECCHHHHCHH
IAEAGGFVSSPIYSSVSGKVKAIEKRRVAVGDMVDSIVIENDGMFTETTYESVEDVTALS
HHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHHHH
KEEIIEKVKNAGVVGMGGAGFPTHVKLSPKEPDKIEYIIANCAECEPYLTSDYRRMLENP
HHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCH
EELIGGMKIILQLFDNAKGILGIEDNKPDCIEKLTELTKDEPRIEVCPLMTKYPQGGERQ
HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCEEECCCHHCCCCCCCEE
LIYATTGRAINSKMLPADAGCIVDNVETIIAVYNAVKNGQPVLKRISTVTGDAVKNPSNI
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHCCCHHH
LYSIGTSYQELVDAAGGFKSQPEKIISGGPMMGFAMFSLDIPTTKTSSSILCFTHDEVAA
EEECCCCHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEEEECCCCCCCCEEEEEECCCHHH
FEPQACINCGRCVEACPEQLIPSRLAKFGLRGQMDEFEKWHGLECIECGSCSFACPSRRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEECCCCCCCCCCHHH
VAQPIKTMKKLVLAEKRKQASKK
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA