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The map label for this gene is scpB

Identifier: 238923986

GI number: 238923986

Start: 1514404

End: 1514967

Strand: Direct

Name: scpB

Synonym: EUBREC_1624

Alternate gene names: 238923986

Gene position: 1514404-1514967 (Clockwise)

Preceding gene: 238923985

Following gene: 238923987

Centisome position: 43.9

GC content: 43.09

Gene sequence:

>564_bases
ATGAATTATAAAGCTGCAATAGAGGCTATTTTATTTACCATGGGAGAATCCGTGGAGCTTGGAAGGATAGCCGATGCAAT
ACAATTAAATGAAAAAGAAACAAAAAAGCTGCTTGACGAGCTGATTAAGGAATATAGAAGTTCTTCAAATATAGGTATGA
ATATCATAGAGCTTGATGGTGCTTATCAGATGTGTACAAAGCCACAGATGTATGAATATCTCATCCGCATTGCAAAGCAG
CCTAAGAAGAGGGTGCTTACGGATGTGCTTTTAGAGACTCTTTCAATCATAGCGTACAAGCAGCCTGTAACAAAGGCTGA
AATAGAAAAAATCAGAGGTGTATCAAGTGAACATGCCGTAAGCAAGCTTGTCGAGTACAATCTGGTGCAGGAGCTTGGAA
GGCTGGATGCTCCGGGAAGACCGCTTTTGTTTGGTACCACAGAGGAATTTCTAAGGAGCTTTGGGGTTTCGTCTATCGAC
GAGCTGCCGGTACTAAGCCCTGTGCAGGTTGAGGAGTTTAAGCAGGAGGCAGAGGAAGAGATGCACGTGAAGCTTGATGT
GTAG

Upstream 100 bases:

>100_bases
AGCTTATGAAGACCGGCAAATTAACTATCGTTCAGGAGCATATTTTTGATGATATCCGGATTGAGTCAAGGATTGCTGCA
TAAAGAGGGGTTGAGGATAT

Downstream 100 bases:

>100_bases
TGCAGGTGTATTGCGTAAGCTGCCATTTCATATAATAAGGACATGCAAATAATCATATATATTACCGATGGAGGTAATTA
TATGGTTATTTTTTTGAAAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNYKAAIEAILFTMGESVELGRIADAIQLNEKETKKLLDELIKEYRSSSNIGMNIIELDGAYQMCTKPQMYEYLIRIAKQ
PKKRVLTDVLLETLSIIAYKQPVTKAEIEKIRGVSSEHAVSKLVEYNLVQELGRLDAPGRPLLFGTTEEFLRSFGVSSID
ELPVLSPVQVEEFKQEAEEEMHVKLDV

Sequences:

>Translated_187_residues
MNYKAAIEAILFTMGESVELGRIADAIQLNEKETKKLLDELIKEYRSSSNIGMNIIELDGAYQMCTKPQMYEYLIRIAKQ
PKKRVLTDVLLETLSIIAYKQPVTKAEIEKIRGVSSEHAVSKLVEYNLVQELGRLDAPGRPLLFGTTEEFLRSFGVSSID
ELPVLSPVQVEEFKQEAEEEMHVKLDV
>Mature_187_residues
MNYKAAIEAILFTMGESVELGRIADAIQLNEKETKKLLDELIKEYRSSSNIGMNIIELDGAYQMCTKPQMYEYLIRIAKQ
PKKRVLTDVLLETLSIIAYKQPVTKAEIEKIRGVSSEHAVSKLVEYNLVQELGRLDAPGRPLLFGTTEEFLRSFGVSSID
ELPVLSPVQVEEFKQEAEEEMHVKLDV

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_EUBR3 (C4Z9E6)

Other databases:

- EMBL:   CP001107
- RefSeq:   YP_002937502.1
- GeneID:   7964700
- GenomeReviews:   CP001107_GR
- KEGG:   ere:EUBREC_1624
- ProtClustDB:   CLSK2506283
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 21208; Mature: 21208

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKAAIEAILFTMGESVELGRIADAIQLNEKETKKLLDELIKEYRSSSNIGMNIIELDG
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
AYQMCTKPQMYEYLIRIAKQPKKRVLTDVLLETLSIIAYKQPVTKAEIEKIRGVSSEHAV
CHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
SKLVEYNLVQELGRLDAPGRPLLFGTTEEFLRSFGVSSIDELPVLSPVQVEEFKQEAEEE
HHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
MHVKLDV
HHEECCC
>Mature Secondary Structure
MNYKAAIEAILFTMGESVELGRIADAIQLNEKETKKLLDELIKEYRSSSNIGMNIIELDG
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
AYQMCTKPQMYEYLIRIAKQPKKRVLTDVLLETLSIIAYKQPVTKAEIEKIRGVSSEHAV
CHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
SKLVEYNLVQELGRLDAPGRPLLFGTTEEFLRSFGVSSIDELPVLSPVQVEEFKQEAEEE
HHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
MHVKLDV
HHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA