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The map label for this gene is ykfC [H]

Identifier: 238923941

GI number: 238923941

Start: 1469398

End: 1470792

Strand: Direct

Name: ykfC [H]

Synonym: EUBREC_1579

Alternate gene names: 238923941

Gene position: 1469398-1470792 (Clockwise)

Preceding gene: 238923940

Following gene: 238923943

Centisome position: 42.6

GC content: 42.22

Gene sequence:

>1395_bases
ATGGCAGAAAACATTGAAAACAATGGCTGTTCGCAAAGAGATAATGCGGAACATGAAGGGTATGTGAAAGCGTCTAGGTC
ATTCAATCGGATATGGAAAGAAAGAGACAGTGCACAGCCGAGACTTTTGGAAACGATACTGTATAAAGACAACTTTAACA
GAGCGTATAAGAGAGTTAAGGCAAACAAGGGAGCGCCGGGAATTGATGGCATGACCATTGAAGAGGCTCTTCCATATCTA
AAGGAACATCAACAAGAGATAACTGACCGCATTTATCGTGGAAAGTATACTCCGTCTCCAGTAAGACGAGTTGAAATTCC
CAAACCAGATGGTGGTGTGCGAAAGCTTGGCATACCAACAGTGATAGACCGTACACTTCAACAGGCAATAACCCAACAGT
TAGTGCCAATCTATGAACCGCTGTTTGCAGATGGTAGCTATGGCTATCGTCCGAACAGAAGTGCAAAAGATGCAATACTT
AAGGTTAAGGAGTATGCAGAACAAGGCTATACATTCGCTGTAGTCCTTGACTTGTCAAAGTACTTCGATACTCTTAATCA
CGAAATTCTCATCAATCTTCTCCGAAAGAATGTAAAAGATGAACGTGTAGTACAGTTGATAAAGCGCTATCTGAAAAGCG
GTGTAATGGAAAACGGAGTGGTCATTGACACAGAGGAAGGCTCACCACAAGGTGGAAATCTATCACCATTGCTGGCAAAT
GTCTACCTCAATGAGTTCGACCAGGAGTTCCTGAAAAGAGGTGTTCCATGCATAAGATATGCAGATGACATCGTGCTTCT
TGCAAAGAGCGGACGAGCATCAGAGAGACTCTTGGAAAGCAGTACAAAATATCTTGAGAAGAGGCTGAAACTTACAGTCA
ACCGAGAAAAGAGCCGTACTGTCAGCGTGTTTGCAATCCGAAATTTTAAATTCCTTGGCTTTGCATTGGGAAGGAACGGG
AAAGGCACTTATGTCCGAGTTCATTCGAAGTCATGGAAGAAGTTTAAGTCCAGATTGAAGGAGTTATCTTCCCGTAAGCG
ATGTCAGTCAATCAAGCCAAGCCTTGAGAAAATCAAGGTGTATGCAAGGGGATGGCTTAACTACTACGGAATTGCAAGTA
TGAAGAGCAACATAGATGACATCAACGGATGGCTCTATCACAGAATATGCATGTGTATATGGAAACAGTGGAAGAAACCT
AGAACGAAATATAAAAATCTAGTCAAACTTGGAATCCCAGAACACTATGCGTCAACAATAGCAAACAGTCGCAGAAAGTA
TTGGTATATCAGCAATAACAAAGCTGTGATTTGGGCGCTGAATAAAGAAAGACTGATAAACAGTGGCTTTTACGATTTAG
CCACAGCCTATCAGTCTGTGCACGTCAACTATTGA

Upstream 100 bases:

>100_bases
CTGAACGCACAGAAGTCAGCAGAGGTCATAGTAGCCGAGAGGTGAAGGACCGAATCAGTAGGAGTCTTGAGTATGACCGA
GAAAGGAGGAATGACCGTCT

Downstream 100 bases:

>100_bases
AAGCGCCGTATACCGAACGGTACGTACGGTGCTGTGAGAGGACGGCGGTTAGTCACCGCCTCCTACTCGATTCGTGGGCA
TAATTCTAACAGTATCTAAA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MAENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGIDGMTIEEALPYL
KEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPTVIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAIL
KVKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
VYLNEFDQEFLKRGVPCIRYADDIVLLAKSGRASERLLESSTKYLEKRLKLTVNREKSRTVSVFAIRNFKFLGFALGRNG
KGTYVRVHSKSWKKFKSRLKELSSRKRCQSIKPSLEKIKVYARGWLNYYGIASMKSNIDDINGWLYHRICMCIWKQWKKP
RTKYKNLVKLGIPEHYASTIANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY

Sequences:

>Translated_464_residues
MAENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGIDGMTIEEALPYL
KEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPTVIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAIL
KVKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
VYLNEFDQEFLKRGVPCIRYADDIVLLAKSGRASERLLESSTKYLEKRLKLTVNREKSRTVSVFAIRNFKFLGFALGRNG
KGTYVRVHSKSWKKFKSRLKELSSRKRCQSIKPSLEKIKVYARGWLNYYGIASMKSNIDDINGWLYHRICMCIWKQWKKP
RTKYKNLVKLGIPEHYASTIANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY
>Mature_463_residues
AENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGIDGMTIEEALPYLK
EHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPTVIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAILK
VKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLANV
YLNEFDQEFLKRGVPCIRYADDIVLLAKSGRASERLLESSTKYLEKRLKLTVNREKSRTVSVFAIRNFKFLGFALGRNGK
GTYVRVHSKSWKKFKSRLKELSSRKRCQSIKPSLEKIKVYARGWLNYYGIASMKSNIDDINGWLYHRICMCIWKQWKKPR
TKYKNLVKLGIPEHYASTIANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=198, Percent_Identity=34.8484848484849, Blast_Score=119, Evalue=9e-28,
Organism=Saccharomyces cerevisiae, GI6226520, Length=277, Percent_Identity=28.158844765343, Blast_Score=101, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 53736; Mature: 53605

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH
ANKGAPGIDGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEECCCHH
VIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHH
YFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHH
VYLNEFDQEFLKRGVPCIRYADDIVLLAKSGRASERLLESSTKYLEKRLKLTVNREKSRT
HHHHHHHHHHHHCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHEECCCCCCE
VSVFAIRNFKFLGFALGRNGKGTYVRVHSKSWKKFKSRLKELSSRKRCQSIKPSLEKIKV
EEEEEEECCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YARGWLNYYGIASMKSNIDDINGWLYHRICMCIWKQWKKPRTKYKNLVKLGIPEHYASTI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHH
ANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY
HCCCCEEEEEECCCEEEEEECHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH
ANKGAPGIDGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEECCCHH
VIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHH
YFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHH
VYLNEFDQEFLKRGVPCIRYADDIVLLAKSGRASERLLESSTKYLEKRLKLTVNREKSRT
HHHHHHHHHHHHCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHEECCCCCCE
VSVFAIRNFKFLGFALGRNGKGTYVRVHSKSWKKFKSRLKELSSRKRCQSIKPSLEKIKV
EEEEEEECCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YARGWLNYYGIASMKSNIDDINGWLYHRICMCIWKQWKKPRTKYKNLVKLGIPEHYASTI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHH
ANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY
HCCCCEEEEEECCCEEEEEECHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]