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The map label for this gene is yfkH [H]

Identifier: 238923938

GI number: 238923938

Start: 1466806

End: 1467768

Strand: Direct

Name: yfkH [H]

Synonym: EUBREC_1576

Alternate gene names: 238923938

Gene position: 1466806-1467768 (Clockwise)

Preceding gene: 238923937

Following gene: 238923939

Centisome position: 42.52

GC content: 41.02

Gene sequence:

>963_bases
ATGACAAAGCAAAGTAGAACGGATTTAGGTAGTAAAACACCGGAAATCAAAACGGAGAAACGTAAGGCCGTAGGTGGTGA
TTGTAAAGAATCTAACATCGAAGGAAAAAGTGCGAGGAAATACAGCAGAAGATGGGATATCATTGTGACAGCCTTTGATT
TTGTGACTAATTTTTCAGAGAGCTCTATTTCTGCATACGCAGGGCAGGCAGCCTTCTTTTTGATGCTGTCGTTTTTCCCG
TTTTTATTGTTTTTCTTTTCACTGCTGAGCTGGACACCGCTTACAGAGGCTGATTTTTTGATGTGGGCGAGTTCGTTTAT
TCCGGAGTCGTTTGGTGACATCATGAAGGATCTGGCCAGTGAGGTGTATGCCAGCGGCACAGGCAGGCTTTCTATTACGA
TGATTACAGCCGTGTACTTAAGCTCAAAGGCTTTTATTTCGTTTCAGCTTGGGCTTGACGATATGTACCATGTGAAGGAA
AACAGAAATTTTATTTTGCGGCGCATATATTCGGTGCTTTACAGTATCGTTTTTGCACTGGCGCTCATTTTTTTATTGGG
TGTCATGGTGTTTGGAAATATGCTCAGGAAGATGTATTTTTCGAATGTTCATCATATAATTGGAAGTATAATAGGCAGTG
TGGTCGATTATCGTCTGGTAATCTGCCTGCCGGTGCTTATTTTATTTTTCTGGGTGATTTATGTGTTTCTGCCAAACAAG
AAGCGTAGGGCAAAGTACCAGTTGCCGGGAGCGGTATTTGCGGCTGCTGCATGGATGATTTTTTCGGGAATCTTTTCTGT
GTACGTGGATAAATACAATAATTATTCTTCATTTTATGGCACAATGACCACTATTGCGCTTATAATGGTATGGTTATATG
GTTGCATGTATGTGCTTTTCATAGGCGGTATAATAAACCGCACATGGGAGGAGCGTATGGAGGCAAAAAAATATTATAAA
TAG

Upstream 100 bases:

>100_bases
CTCACTTTTTCTGTAAAGGCTTTTGATGAGGCAGGACTCATTGGTGAGGGTACTCATGAGCGTTTTATAGTATTTGAGGA
GAAATTCCAGAAGAAGGCAG

Downstream 100 bases:

>100_bases
TAAATTCGGAGGCTTCGAATATATGGATAATAATAAAGAAATGATAGAAGGGCTTGTATCACAGATACTTGACGATTATC
ATGATGACAAAATCATAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTKQSRTDLGSKTPEIKTEKRKAVGGDCKESNIEGKSARKYSRRWDIIVTAFDFVTNFSESSISAYAGQAAFFLMLSFFP
FLLFFFSLLSWTPLTEADFLMWASSFIPESFGDIMKDLASEVYASGTGRLSITMITAVYLSSKAFISFQLGLDDMYHVKE
NRNFILRRIYSVLYSIVFALALIFLLGVMVFGNMLRKMYFSNVHHIIGSIIGSVVDYRLVICLPVLILFFWVIYVFLPNK
KRRAKYQLPGAVFAAAAWMIFSGIFSVYVDKYNNYSSFYGTMTTIALIMVWLYGCMYVLFIGGIINRTWEERMEAKKYYK

Sequences:

>Translated_320_residues
MTKQSRTDLGSKTPEIKTEKRKAVGGDCKESNIEGKSARKYSRRWDIIVTAFDFVTNFSESSISAYAGQAAFFLMLSFFP
FLLFFFSLLSWTPLTEADFLMWASSFIPESFGDIMKDLASEVYASGTGRLSITMITAVYLSSKAFISFQLGLDDMYHVKE
NRNFILRRIYSVLYSIVFALALIFLLGVMVFGNMLRKMYFSNVHHIIGSIIGSVVDYRLVICLPVLILFFWVIYVFLPNK
KRRAKYQLPGAVFAAAAWMIFSGIFSVYVDKYNNYSSFYGTMTTIALIMVWLYGCMYVLFIGGIINRTWEERMEAKKYYK
>Mature_319_residues
TKQSRTDLGSKTPEIKTEKRKAVGGDCKESNIEGKSARKYSRRWDIIVTAFDFVTNFSESSISAYAGQAAFFLMLSFFPF
LLFFFSLLSWTPLTEADFLMWASSFIPESFGDIMKDLASEVYASGTGRLSITMITAVYLSSKAFISFQLGLDDMYHVKEN
RNFILRRIYSVLYSIVFALALIFLLGVMVFGNMLRKMYFSNVHHIIGSIIGSVVDYRLVICLPVLILFFWVIYVFLPNKK
RRAKYQLPGAVFAAAAWMIFSGIFSVYVDKYNNYSSFYGTMTTIALIMVWLYGCMYVLFIGGIINRTWEERMEAKKYYK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 36767; Mature: 36635

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQSRTDLGSKTPEIKTEKRKAVGGDCKESNIEGKSARKYSRRWDIIVTAFDFVTNFSE
CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
SSISAYAGQAAFFLMLSFFPFLLFFFSLLSWTPLTEADFLMWASSFIPESFGDIMKDLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
EVYASGTGRLSITMITAVYLSSKAFISFQLGLDDMYHVKENRNFILRRIYSVLYSIVFAL
HHHHCCCCCCHHHHHHHHHHCCHHEEEEEECCCHHHHHHHCHHHHHHHHHHHHHHHHHHH
ALIFLLGVMVFGNMLRKMYFSNVHHIIGSIIGSVVDYRLVICLPVLILFFWVIYVFLPNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KRRAKYQLPGAVFAAAAWMIFSGIFSVYVDKYNNYSSFYGTMTTIALIMVWLYGCMYVLF
HHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IGGIINRTWEERMEAKKYYK
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKQSRTDLGSKTPEIKTEKRKAVGGDCKESNIEGKSARKYSRRWDIIVTAFDFVTNFSE
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH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HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]