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The map label for this gene is ydaM [H]

Identifier: 238923915

GI number: 238923915

Start: 1433019

End: 1434059

Strand: Direct

Name: ydaM [H]

Synonym: EUBREC_1551

Alternate gene names: 238923915

Gene position: 1433019-1434059 (Clockwise)

Preceding gene: 238923914

Following gene: 238923916

Centisome position: 41.54

GC content: 37.66

Gene sequence:

>1041_bases
ATGAGTAGCAATGATAGTACTGCTAAGGAGCAGAGCTTTCTATTTAATGTAAACAAAATATTTCTTGTCATCCATCTGCT
GATGCTATTTATGTTTTCATCATTAGGTGTAGATTTGATGGCAGGAGTCAGTCTGATCAGCATATGCTTTTATTTCCTTG
CATTCAGTCTGACAAAATCTGAAAAACTGAGCATATATGTTTATAGTGTGGCTGTTGAGATATTGCTTTATATGATACTT
GCGGTGGTTTGTCTCGGAATTCAATGTAATTTTCAGCTTTTTTTGATCGATGCAATGTTTTTTCTTTTTTCCATGGATTA
TGTGGTCCTCAGGAAGAAAAAAAAGAATCATGTTGCCATTCTGCTTTGCTGTGTATATGCTATTGCTCTGATTATTCTTT
ATATGCTTGATGGCTTTTACGCACCTTTATATAAGTTGGATTCTGTTGTAATTAAGAGTATTTCTATTGCTATGATTTCT
GGTGTAGTTTTCTTGATAATAACATGTATGATGTGCCTTTTGCATTTTATGTCTTCCGAGGAGGGGGCAATGGAAAAGCA
GGCACAGTTTGATGCGCTGACGGAGCTTCCAAATCGTTTCTATATGATGGCGAAGCTTAAGAATCTTTTTGAGGCTGAGA
AGCAGGGGGAATATTTCCTTGCAATGATTGATATTGATGATTTTAAGAAAATTAACGATTCATTCGGACATAATGTAGGA
GATGATGCACTTAAGATGCTCGCTCGTACTATCGTAAACAAGGCTCGAGGTGTTGAGCTTAGCTATTGCAGATGGGGAGG
AGAAGAGTTTTTACTTCTTGGCAAATGTGTCGACGGAGAGGTGCCTAAGAATTTTCTCGATGAGCTTCGTGTGGAGATTA
ATTCAAAATCCTTCTGGACATCTAAGGGCAGCGGAAGGATGACAGTGACTATAGGTGCAGGAAAATATAAAGTGGGGCAG
GATTACAAGGAATGGATTAATTTTGTTGACAAACAGCTTTATGTCGGAAAATGTACCGGTAAGAATAAGGTTGTATGCTG
A

Upstream 100 bases:

>100_bases
TAGTCTAGTACTTTTGCACAATAATATATTGTTATATTTGTTAAAATGTGTTATTATTCTATAGTAATATATTAGATATT
TTTTATGAAGGTATTGGACA

Downstream 100 bases:

>100_bases
GACATATTTCAAGGCTTTGACATTTTTAAATGAGCTGTAATCGTTGCTGGTCACACTGTTAGGCGTGAACAGTCACAATC
GCATTGAAATTTATATTGAA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MSSNDSTAKEQSFLFNVNKIFLVIHLLMLFMFSSLGVDLMAGVSLISICFYFLAFSLTKSEKLSIYVYSVAVEILLYMIL
AVVCLGIQCNFQLFLIDAMFFLFSMDYVVLRKKKKNHVAILLCCVYAIALIILYMLDGFYAPLYKLDSVVIKSISIAMIS
GVVFLIITCMMCLLHFMSSEEGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGHNVG
DDALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVPKNFLDELRVEINSKSFWTSKGSGRMTVTIGAGKYKVGQ
DYKEWINFVDKQLYVGKCTGKNKVVC

Sequences:

>Translated_346_residues
MSSNDSTAKEQSFLFNVNKIFLVIHLLMLFMFSSLGVDLMAGVSLISICFYFLAFSLTKSEKLSIYVYSVAVEILLYMIL
AVVCLGIQCNFQLFLIDAMFFLFSMDYVVLRKKKKNHVAILLCCVYAIALIILYMLDGFYAPLYKLDSVVIKSISIAMIS
GVVFLIITCMMCLLHFMSSEEGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGHNVG
DDALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVPKNFLDELRVEINSKSFWTSKGSGRMTVTIGAGKYKVGQ
DYKEWINFVDKQLYVGKCTGKNKVVC
>Mature_345_residues
SSNDSTAKEQSFLFNVNKIFLVIHLLMLFMFSSLGVDLMAGVSLISICFYFLAFSLTKSEKLSIYVYSVAVEILLYMILA
VVCLGIQCNFQLFLIDAMFFLFSMDYVVLRKKKKNHVAILLCCVYAIALIILYMLDGFYAPLYKLDSVVIKSISIAMISG
VVFLIITCMMCLLHFMSSEEGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGHNVGD
DALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVPKNFLDELRVEINSKSFWTSKGSGRMTVTIGAGKYKVGQD
YKEWINFVDKQLYVGKCTGKNKVVC

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=34.6153846153846, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI145693134, Length=191, Percent_Identity=28.7958115183246, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787262, Length=239, Percent_Identity=28.8702928870293, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082007, Length=205, Percent_Identity=27.8048780487805, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=29.2993630573248, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=28.9308176100629, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=31.3253012048193, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 39232; Mature: 39101

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNDSTAKEQSFLFNVNKIFLVIHLLMLFMFSSLGVDLMAGVSLISICFYFLAFSLTKS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
EKLSIYVYSVAVEILLYMILAVVCLGIQCNFQLFLIDAMFFLFSMDYVVLRKKKKNHVAI
CCEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LLCCVYAIALIILYMLDGFYAPLYKLDSVVIKSISIAMISGVVFLIITCMMCLLHFMSSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGHNVG
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHCCCCC
DDALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVPKNFLDELRVEINSKSFWT
HHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE
SKGSGRMTVTIGAGKYKVGQDYKEWINFVDKQLYVGKCTGKNKVVC
CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCC
>Mature Secondary Structure 
SSNDSTAKEQSFLFNVNKIFLVIHLLMLFMFSSLGVDLMAGVSLISICFYFLAFSLTKS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
EKLSIYVYSVAVEILLYMILAVVCLGIQCNFQLFLIDAMFFLFSMDYVVLRKKKKNHVAI
CCEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LLCCVYAIALIILYMLDGFYAPLYKLDSVVIKSISIAMISGVVFLIITCMMCLLHFMSSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGHNVG
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHCCCCC
DDALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVPKNFLDELRVEINSKSFWT
HHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE
SKGSGRMTVTIGAGKYKVGQDYKEWINFVDKQLYVGKCTGKNKVVC
CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]