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The map label for this gene is mrnC [H]

Identifier: 238923820

GI number: 238923820

Start: 1327496

End: 1327924

Strand: Direct

Name: mrnC [H]

Synonym: EUBREC_1447

Alternate gene names: 238923820

Gene position: 1327496-1327924 (Clockwise)

Preceding gene: 238923819

Following gene: 238923821

Centisome position: 38.48

GC content: 43.12

Gene sequence:

>429_bases
ATGAAGATAGACTCATATATTAAGGAACAGTTTGGAATAAAGGACGTTGATATAAGGACATACTCGCCGCTTACACTTGC
ATATATCGGTGATGGCATATTTGATATTGTCATCCGCTCAGTTGTGGTGGGAAAAGGCAATACAAAGGCAAATCTGCTTC
ATAAGCACACAAGTAATATAGTAAAGGCACATACGCAGGCTCTCATGATAGAGGCACTTTTACCTCATCTGACAGAGGAG
GAGAGTGATGTGTATCACAGGGGGCGCAATGCCAAGTCGCCTTCCATGGCAAAAAACGCTACAATGGCTGATTACAGGAA
GGCTACAGGGCTTGAGGCGGTCATGGGCTATCTTTATCTGAAGGATGATTTTGAGAGGGTTGTTTCACTCACTAAGCTTG
GAGTGGAGCTTTTAGGAATTGAAATATAG

Upstream 100 bases:

>100_bases
AAGGATTTTGCGACAGCCGATGCCATAAGAGATGAGCTTCTGGCAAGGGGGGTTGCCATAAAGGATACCAGAGAGGGAGT
AAAATGGGAGCTTGTATAGT

Downstream 100 bases:

>100_bases
CACAAAATAAGAGGAAAATATGGATAACAACAATAAAGAAAAATTTCATGAGAATTATATAGAGGGCAGAAATGCTGTGC
TGGAGGCTTTCCGTTCGGGA

Product: possible ribonuclease III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKIDSYIKEQFGIKDVDIRTYSPLTLAYIGDGIFDIVIRSVVVGKGNTKANLLHKHTSNIVKAHTQALMIEALLPHLTEE
ESDVYHRGRNAKSPSMAKNATMADYRKATGLEAVMGYLYLKDDFERVVSLTKLGVELLGIEI

Sequences:

>Translated_142_residues
MKIDSYIKEQFGIKDVDIRTYSPLTLAYIGDGIFDIVIRSVVVGKGNTKANLLHKHTSNIVKAHTQALMIEALLPHLTEE
ESDVYHRGRNAKSPSMAKNATMADYRKATGLEAVMGYLYLKDDFERVVSLTKLGVELLGIEI
>Mature_142_residues
MKIDSYIKEQFGIKDVDIRTYSPLTLAYIGDGIFDIVIRSVVVGKGNTKANLLHKHTSNIVKAHTQALMIEALLPHLTEE
ESDVYHRGRNAKSPSMAKNATMADYRKATGLEAVMGYLYLKDDFERVVSLTKLGVELLGIEI

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15840; Mature: 15840

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDSYIKEQFGIKDVDIRTYSPLTLAYIGDGIFDIVIRSVVVGKGNTKANLLHKHTSNI
CCCHHHHHHHCCCCCCCEECCCCEEEEHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VKAHTQALMIEALLPHLTEEESDVYHRGRNAKSPSMAKNATMADYRKATGLEAVMGYLYL
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHH
KDDFERVVSLTKLGVELLGIEI
HHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MKIDSYIKEQFGIKDVDIRTYSPLTLAYIGDGIFDIVIRSVVVGKGNTKANLLHKHTSNI
CCCHHHHHHHCCCCCCCEECCCCEEEEHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VKAHTQALMIEALLPHLTEEESDVYHRGRNAKSPSMAKNATMADYRKATGLEAVMGYLYL
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHH
KDDFERVVSLTKLGVELLGIEI
HHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]