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The map label for this gene is yocR [H]

Identifier: 238923796

GI number: 238923796

Start: 1300895

End: 1302250

Strand: Direct

Name: yocR [H]

Synonym: EUBREC_1419

Alternate gene names: 238923796

Gene position: 1300895-1302250 (Clockwise)

Preceding gene: 238923795

Following gene: 238923797

Centisome position: 37.71

GC content: 43.81

Gene sequence:

>1356_bases
ATGAAAAGAGAATCATTTAAATCACGTCTGGGATTTATACTGGTAAGTGCAGGATGCGCTATAGGCATAGGCAATGTATG
GCGTTTTCCGTATGTGACAGGTCAAAACGGTGGCGGTATTTTTGTACTGTTTTACCTTATATTTCTGGTATGCATGGGAC
TTCCGGTGCTTACGATGGAGCTTGCTGTAGGCCGGGCCAGCAGAAAAAGTGCTGTGATGAGCTACAAGGCTCTTGAGAAA
GAGGGCAGTAAATGGCATATTCACGGATGGATAGCCATGCTTGGCTGCTACATGCTCATGATGTATTACACAACAGTCTC
AGGCTGGATGGTTGCGTATTTCTTTAAATTCCTAAAGGGAGATTTTACATCAGGCATGAATACTGATGACACGGCAGCTG
CATTTGGAAACATGCTTGCAGACCCCAAGCAGATGGCTTTCTGGATGATAGTTACGGTTGTGCTTGGCTTTTTGGTGTGC
AGCCGTGGTCTGCAGAATGGGCTCGAGAAAATCAGTAAATTTATGATGAGTGCTCTGCTCTTGCTTATCATTGTCCTTGC
GGTGCACAGTATCACACTTTCAGGGGCTTTGGAAGGAGTGAAATTCTATCTTGTTCCAAATCTGGATGCGGTCTCTGAAA
TTGGAATAAAGAATGTAATAACAGCGGCCATGAATCAGGCGTTTTTTACGCTGAGTCTGGGTGTGGCCGCAATGGAGATA
TTCGGCAGCTATATGGGAAAGGACTGCACTCTTGCAGGTGAGGGTGCCAAAATATGTGCTCTTGATACATTTGTGGCTAT
AATGTCAGGCCTTATCATTTTCCCGGCTTGCTTCAGCTATGGGGTGGAGGTAGACGCAGGACCAAGCCTTATCTTTATCA
CTTTGCCAAATGTGTTTGTAAATATGCAGGGAGGCCGCATATGGGGCTGTCTTTTCTTCATGTTTATGACCTTTGCCAGC
TTTTCAACCGTTATTGCGGTATTTGAGAATATTATGTCGTTTGCCATTGATATGTTTGGCTGGTCCAGAAACAAGGCTGC
GCTAATAAATGGTGTGATAATACTTATTGCAAGTATGCCATGTGTACTTGGATACAATGTGTGGAGCAATCTGCACCTCA
TAGGAGGCAGGGATGTGCTTGACAGCGAGGACTTTATGGTAAGCAATCTGCTTCTCCCAATTGGCTCACTGGTTTATCTG
CTTTTTTGTGTGACAAAGTGGGGCTGGGGCTTTGATAAGTATATAGATGAGGCAAATACAGGATCAGGACTTAAGATTTC
AAGGAAGCTTAAACCGTATTTTCAGTTCATACTGCCGCTTTTAATTTTGTTTATTTTTATCCAGGGATTGATATAG

Upstream 100 bases:

>100_bases
GAGCTGCGAGTCTTTGAGGAGAGTAATAAAGCACAAAGCAATAGTCAATGCTCACAGCAGGGTGATAACGTAACGCAATA
ACAATAGGAGATATATAAAT

Downstream 100 bases:

>100_bases
TTATGTAGTTTTTGAAAATCAGACAGGAGAGTGTAAAATATGTTAGACCAGAATACCTTTATAGAGACAGTGCAGAGCGT
GGCCGAGATTATCAGGACAT

Product: Na+-dependent transporters of the SNF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MKRESFKSRLGFILVSAGCAIGIGNVWRFPYVTGQNGGGIFVLFYLIFLVCMGLPVLTMELAVGRASRKSAVMSYKALEK
EGSKWHIHGWIAMLGCYMLMMYYTTVSGWMVAYFFKFLKGDFTSGMNTDDTAAAFGNMLADPKQMAFWMIVTVVLGFLVC
SRGLQNGLEKISKFMMSALLLLIIVLAVHSITLSGALEGVKFYLVPNLDAVSEIGIKNVITAAMNQAFFTLSLGVAAMEI
FGSYMGKDCTLAGEGAKICALDTFVAIMSGLIIFPACFSYGVEVDAGPSLIFITLPNVFVNMQGGRIWGCLFFMFMTFAS
FSTVIAVFENIMSFAIDMFGWSRNKAALINGVIILIASMPCVLGYNVWSNLHLIGGRDVLDSEDFMVSNLLLPIGSLVYL
LFCVTKWGWGFDKYIDEANTGSGLKISRKLKPYFQFILPLLILFIFIQGLI

Sequences:

>Translated_451_residues
MKRESFKSRLGFILVSAGCAIGIGNVWRFPYVTGQNGGGIFVLFYLIFLVCMGLPVLTMELAVGRASRKSAVMSYKALEK
EGSKWHIHGWIAMLGCYMLMMYYTTVSGWMVAYFFKFLKGDFTSGMNTDDTAAAFGNMLADPKQMAFWMIVTVVLGFLVC
SRGLQNGLEKISKFMMSALLLLIIVLAVHSITLSGALEGVKFYLVPNLDAVSEIGIKNVITAAMNQAFFTLSLGVAAMEI
FGSYMGKDCTLAGEGAKICALDTFVAIMSGLIIFPACFSYGVEVDAGPSLIFITLPNVFVNMQGGRIWGCLFFMFMTFAS
FSTVIAVFENIMSFAIDMFGWSRNKAALINGVIILIASMPCVLGYNVWSNLHLIGGRDVLDSEDFMVSNLLLPIGSLVYL
LFCVTKWGWGFDKYIDEANTGSGLKISRKLKPYFQFILPLLILFIFIQGLI
>Mature_451_residues
MKRESFKSRLGFILVSAGCAIGIGNVWRFPYVTGQNGGGIFVLFYLIFLVCMGLPVLTMELAVGRASRKSAVMSYKALEK
EGSKWHIHGWIAMLGCYMLMMYYTTVSGWMVAYFFKFLKGDFTSGMNTDDTAAAFGNMLADPKQMAFWMIVTVVLGFLVC
SRGLQNGLEKISKFMMSALLLLIIVLAVHSITLSGALEGVKFYLVPNLDAVSEIGIKNVITAAMNQAFFTLSLGVAAMEI
FGSYMGKDCTLAGEGAKICALDTFVAIMSGLIIFPACFSYGVEVDAGPSLIFITLPNVFVNMQGGRIWGCLFFMFMTFAS
FSTVIAVFENIMSFAIDMFGWSRNKAALINGVIILIASMPCVLGYNVWSNLHLIGGRDVLDSEDFMVSNLLLPIGSLVYL
LFCVTKWGWGFDKYIDEANTGSGLKISRKLKPYFQFILPLLILFIFIQGLI

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=497, Percent_Identity=22.9376257545272, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI188528618, Length=492, Percent_Identity=22.9674796747967, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI171184408, Length=499, Percent_Identity=24.248496993988, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI171184406, Length=499, Percent_Identity=24.248496993988, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI171184404, Length=499, Percent_Identity=24.248496993988, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI7657587, Length=388, Percent_Identity=24.2268041237113, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI4507043, Length=401, Percent_Identity=25.9351620947631, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI58219014, Length=307, Percent_Identity=24.4299674267101, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI33354281, Length=300, Percent_Identity=23.6666666666667, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI197276623, Length=504, Percent_Identity=23.6111111111111, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI54607094, Length=504, Percent_Identity=23.6111111111111, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI4507041, Length=504, Percent_Identity=21.2301587301587, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI51468073, Length=298, Percent_Identity=22.8187919463087, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI289191351, Length=511, Percent_Identity=21.7221135029354, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI4557046, Length=511, Percent_Identity=21.7221135029354, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI289191377, Length=511, Percent_Identity=21.7221135029354, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI194018524, Length=302, Percent_Identity=24.1721854304636, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI11181770, Length=298, Percent_Identity=25.1677852348993, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI134304856, Length=409, Percent_Identity=23.960880195599, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI5032097, Length=514, Percent_Identity=22.568093385214, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI21361693, Length=113, Percent_Identity=36.283185840708, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI218563756, Length=505, Percent_Identity=23.1683168316832, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI67782317, Length=405, Percent_Identity=22.4691358024691, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI12408638, Length=275, Percent_Identity=25.8181818181818, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI197276625, Length=120, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI92859670, Length=77, Percent_Identity=44.1558441558442, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI300360519, Length=314, Percent_Identity=21.3375796178344, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI67782315, Length=65, Percent_Identity=46.1538461538462, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI67782313, Length=65, Percent_Identity=46.1538461538462, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI133952791, Length=538, Percent_Identity=23.9776951672862, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17554804, Length=371, Percent_Identity=25.8760107816712, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI25146584, Length=395, Percent_Identity=22.0253164556962, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71995588, Length=416, Percent_Identity=22.1153846153846, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17569475, Length=397, Percent_Identity=22.4181360201511, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17535731, Length=132, Percent_Identity=31.0606060606061, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17555248, Length=113, Percent_Identity=30.9734513274336, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71998244, Length=342, Percent_Identity=25.4385964912281, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45550877, Length=486, Percent_Identity=26.3374485596708, Blast_Score=131, Evalue=8e-31,
Organism=Drosophila melanogaster, GI45551183, Length=401, Percent_Identity=26.4339152119701, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI17136952, Length=407, Percent_Identity=23.5872235872236, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI281364394, Length=408, Percent_Identity=23.2843137254902, Blast_Score=118, Evalue=1e-26,
Organism=Drosophila melanogaster, GI28574704, Length=408, Percent_Identity=23.2843137254902, Blast_Score=118, Evalue=1e-26,
Organism=Drosophila melanogaster, GI17136950, Length=408, Percent_Identity=23.2843137254902, Blast_Score=118, Evalue=1e-26,
Organism=Drosophila melanogaster, GI28574702, Length=408, Percent_Identity=23.2843137254902, Blast_Score=118, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24762620, Length=497, Percent_Identity=24.5472837022133, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI19921936, Length=503, Percent_Identity=23.8568588469185, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24661428, Length=499, Percent_Identity=23.6472945891784, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24582567, Length=411, Percent_Identity=24.8175182481752, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI281363702, Length=484, Percent_Identity=23.5537190082645, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24639514, Length=394, Percent_Identity=21.3197969543147, Blast_Score=92, Evalue=1e-18,
Organism=Drosophila melanogaster, GI221329674, Length=394, Percent_Identity=21.3197969543147, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24639853, Length=518, Percent_Identity=21.2355212355212, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24639516, Length=298, Percent_Identity=23.1543624161074, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24655079, Length=315, Percent_Identity=22.8571428571429, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI281364136, Length=414, Percent_Identity=24.3961352657005, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI281363700, Length=336, Percent_Identity=23.8095238095238, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24654186, Length=116, Percent_Identity=35.3448275862069, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 49652; Mature: 49652

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRESFKSRLGFILVSAGCAIGIGNVWRFPYVTGQNGGGIFVLFYLIFLVCMGLPVLTME
CCCHHHHHHHCCCEEECCCCEECCCEEECCEEECCCCCHHHHHHHHHHHHHCCCHHHHHH
LAVGRASRKSAVMSYKALEKEGSKWHIHGWIAMLGCYMLMMYYTTVSGWMVAYFFKFLKG
HHHCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DFTSGMNTDDTAAAFGNMLADPKQMAFWMIVTVVLGFLVCSRGLQNGLEKISKFMMSALL
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIIVLAVHSITLSGALEGVKFYLVPNLDAVSEIGIKNVITAAMNQAFFTLSLGVAAMEI
HHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGSYMGKDCTLAGEGAKICALDTFVAIMSGLIIFPACFSYGVEVDAGPSLIFITLPNVFV
HHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECCEEE
NMQGGRIWGCLFFMFMTFASFSTVIAVFENIMSFAIDMFGWSRNKAALINGVIILIASMP
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
CVLGYNVWSNLHLIGGRDVLDSEDFMVSNLLLPIGSLVYLLFCVTKWGWGFDKYIDEANT
HHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
GSGLKISRKLKPYFQFILPLLILFIFIQGLI
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRESFKSRLGFILVSAGCAIGIGNVWRFPYVTGQNGGGIFVLFYLIFLVCMGLPVLTME
CCCHHHHHHHCCCEEECCCCEECCCEEECCEEECCCCCHHHHHHHHHHHHHCCCHHHHHH
LAVGRASRKSAVMSYKALEKEGSKWHIHGWIAMLGCYMLMMYYTTVSGWMVAYFFKFLKG
HHHCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DFTSGMNTDDTAAAFGNMLADPKQMAFWMIVTVVLGFLVCSRGLQNGLEKISKFMMSALL
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIIVLAVHSITLSGALEGVKFYLVPNLDAVSEIGIKNVITAAMNQAFFTLSLGVAAMEI
HHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGSYMGKDCTLAGEGAKICALDTFVAIMSGLIIFPACFSYGVEVDAGPSLIFITLPNVFV
HHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECCEEE
NMQGGRIWGCLFFMFMTFASFSTVIAVFENIMSFAIDMFGWSRNKAALINGVIILIASMP
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
CVLGYNVWSNLHLIGGRDVLDSEDFMVSNLLLPIGSLVYLLFCVTKWGWGFDKYIDEANT
HHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
GSGLKISRKLKPYFQFILPLLILFIFIQGLI
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]