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The map label for this gene is yqhC [C]

Identifier: 238923759

GI number: 238923759

Start: 1255296

End: 1256234

Strand: Direct

Name: yqhC [C]

Synonym: EUBREC_1381

Alternate gene names: 238923759

Gene position: 1255296-1256234 (Clockwise)

Preceding gene: 238923758

Following gene: 238923760

Centisome position: 36.39

GC content: 40.26

Gene sequence:

>939_bases
ATGGCGAAAAGAAAAAAAGACACGATGGAATTCAGATTTTATGAGTTGCCACAGGGAGAATCTGCACTTGTGCTGTGTGG
AGAATCATGGAAGAGAGTGTATGGTCATGATGAATTACACCTGCATTTCCATAATCTGCTTGAAATCGGCATCTGCCGCG
AGGGAGATGGAAATATGTATCTGGATGAGGATATTTACCAGTATCATGACGGCGATATCACATTTATACCTGAGAATTTT
CCGCATGTTACAGTCAGCTATGGTGAGGTGGTAAATTTCTGGGAGTATATTTTCATTGACCTGCGCTCTGTGATAGAAGA
AATGTTTCCAAACAATGCGGCATTCCAGAATGATGCAGTTTCGACCATCTCAAAAAAAGCATTTATGACCAATGTATACC
AAAGCCCGGTTGTGGCCGGATATATAAATTCCATCATTAGGGAAACTAATGAGCACAAGGAATATTCCCAGAGAACAATA
AAGCTTCTTGTGCAGGGAATTGTAATTGAATTGCTGCGCAAGTATGATGAGCTGCCGGAGGAAGATAATGATGTCGTAAA
GGGCACTAATATGTCACAGATAGCCACGGCGCTTGACTATATGAATAAGCATTACAGTGAAACAATAAAGGCAGGGGAGC
TTTCGTCACTGTGCAATATGAGTGAGACTCATTTCAGGAGACTGTTTGAATCATATATCAATATGCCGCCTATGGAGTAT
CTGAATCTGATAAGAGTGCAGAAGGCGTGCGAGCTTATGAAAAAGACAAATGAGCCGATGGAGCTTATTGCACAAAAATG
TGGATTTACAACTCAGTCAACTTTTAACCGTAATTTCCGCAAATTTTTGAACACTTCGCCATATCAGTGGAAGATAAATC
CTGAAAATTATGAGCATAAACTACTCAATTTTAGGATATCTGCACTAAAGGGATGGTAG

Upstream 100 bases:

>100_bases
AGAGATTCGACAAGTTCGATTTTGATTAAAGTAGTGATTAGTACGCTGCTGCTATAATAGCAGCAGCGTATTTTGCATTT
CGCTACAAAGGAGAGTATAT

Downstream 100 bases:

>100_bases
AAAACATGTCTTTTCGCATATTTTTGTACATTTATGTTTGAATATGCATATAATTGTGTGGAATTTGTTAACACAGAAAC
AACGTATATGGTTATAATGA

Product: L-rhamnose operon transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAKRKKDTMEFRFYELPQGESALVLCGESWKRVYGHDELHLHFHNLLEIGICREGDGNMYLDEDIYQYHDGDITFIPENF
PHVTVSYGEVVNFWEYIFIDLRSVIEEMFPNNAAFQNDAVSTISKKAFMTNVYQSPVVAGYINSIIRETNEHKEYSQRTI
KLLVQGIVIELLRKYDELPEEDNDVVKGTNMSQIATALDYMNKHYSETIKAGELSSLCNMSETHFRRLFESYINMPPMEY
LNLIRVQKACELMKKTNEPMELIAQKCGFTTQSTFNRNFRKFLNTSPYQWKINPENYEHKLLNFRISALKGW

Sequences:

>Translated_312_residues
MAKRKKDTMEFRFYELPQGESALVLCGESWKRVYGHDELHLHFHNLLEIGICREGDGNMYLDEDIYQYHDGDITFIPENF
PHVTVSYGEVVNFWEYIFIDLRSVIEEMFPNNAAFQNDAVSTISKKAFMTNVYQSPVVAGYINSIIRETNEHKEYSQRTI
KLLVQGIVIELLRKYDELPEEDNDVVKGTNMSQIATALDYMNKHYSETIKAGELSSLCNMSETHFRRLFESYINMPPMEY
LNLIRVQKACELMKKTNEPMELIAQKCGFTTQSTFNRNFRKFLNTSPYQWKINPENYEHKLLNFRISALKGW
>Mature_311_residues
AKRKKDTMEFRFYELPQGESALVLCGESWKRVYGHDELHLHFHNLLEIGICREGDGNMYLDEDIYQYHDGDITFIPENFP
HVTVSYGEVVNFWEYIFIDLRSVIEEMFPNNAAFQNDAVSTISKKAFMTNVYQSPVVAGYINSIIRETNEHKEYSQRTIK
LLVQGIVIELLRKYDELPEEDNDVVKGTNMSQIATALDYMNKHYSETIKAGELSSLCNMSETHFRRLFESYINMPPMEYL
NLIRVQKACELMKKTNEPMELIAQKCGFTTQSTFNRNFRKFLNTSPYQWKINPENYEHKLLNFRISALKGW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36648; Mature: 36517

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRKKDTMEFRFYELPQGESALVLCGESWKRVYGHDELHLHFHNLLEIGICREGDGNMY
CCCCCCCCHHEEEEECCCCCCEEEEECCHHHHHHCCCCEEEHHHHHHHHHEEECCCCCEE
LDEDIYQYHDGDITFIPENFPHVTVSYGEVVNFWEYIFIDLRSVIEEMFPNNAAFQNDAV
ECCHHHHHCCCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
STISKKAFMTNVYQSPVVAGYINSIIRETNEHKEYSQRTIKLLVQGIVIELLRKYDELPE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EDNDVVKGTNMSQIATALDYMNKHYSETIKAGELSSLCNMSETHFRRLFESYINMPPMEY
CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHH
LNLIRVQKACELMKKTNEPMELIAQKCGFTTQSTFNRNFRKFLNTSPYQWKINPENYEHK
HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHH
LLNFRISALKGW
HHHHHHHHHCCC
>Mature Secondary Structure 
AKRKKDTMEFRFYELPQGESALVLCGESWKRVYGHDELHLHFHNLLEIGICREGDGNMY
CCCCCCCHHEEEEECCCCCCEEEEECCHHHHHHCCCCEEEHHHHHHHHHEEECCCCCEE
LDEDIYQYHDGDITFIPENFPHVTVSYGEVVNFWEYIFIDLRSVIEEMFPNNAAFQNDAV
ECCHHHHHCCCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
STISKKAFMTNVYQSPVVAGYINSIIRETNEHKEYSQRTIKLLVQGIVIELLRKYDELPE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EDNDVVKGTNMSQIATALDYMNKHYSETIKAGELSSLCNMSETHFRRLFESYINMPPMEY
CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHH
LNLIRVQKACELMKKTNEPMELIAQKCGFTTQSTFNRNFRKFLNTSPYQWKINPENYEHK
HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHH
LLNFRISALKGW
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]