Click here to switch to the map view.

The map label for this gene is ccpA [H]

Identifier: 238923696

GI number: 238923696

Start: 1195024

End: 1196019

Strand: Direct

Name: ccpA [H]

Synonym: EUBREC_1318

Alternate gene names: 238923696

Gene position: 1195024-1196019 (Clockwise)

Preceding gene: 238923694

Following gene: 238923698

Centisome position: 34.64

GC content: 45.28

Gene sequence:

>996_bases
ATGAGTAACAATATCACTATATCAGATGTAGCAGAGGCACTTGGCGTTTCAAAGACAACAGTAAGCAGGGCTATATCGGG
AAAGGGCAGGATAGGCGCTGCAACAAGAAAAAGAGTGCTTGAATATATACAGGAGCATGATTATAAACCTAATGTAATAG
CCAGAGGGCTTGCACAGTCAAAGACATTTAATATATGTGTGGTGATGCCGGGGGATTATGCACTTGTCGATCTGCCATTT
TTCCAGGAAGCTATAATGGGAATTCAGGAGATAGCAGGTATGATGGAATACGACCTTTTGCTTTGTATAGGCTCAGGCAA
TGATATGGCGGGGCTTAGGCGTATCATACAGAATCATAAGGTGGATGGAGTGGTGCTGCTTCGCACGATGGTAGATGATC
CACAGGTGACATTCCTGCAGGAGCGCAGGATACCGTTTGTTACAGCTGGCTCATGCAAATATAAGGATGTAAAGCAGATT
GACCATGACCATAGAAGTGCCTGCAGGGAGCTGACATCAATTATGCTCATGCGTGGCATGAAAAATATGGCGCTTCTCGG
AGGAAGCGAGGATATTGTTGTAAATCAGACCAGATACGCAGGCGTAGTGGATGCCCATGAGCAGTTTGGAAAGAAAATAA
ATGACAATCTTGTATTTTTAAACCTTGAAGGCAAAGCATATGTCGAAAAGGCTGTAGATGATGCAATTGACAGAGGCTGT
GACTGTCTGCTGTGTATGGATGATGCAGTCTGTGCGCAGGCCATGAGACGGCTCCGCGAAAGGCATATAAAGGTGCCGCA
GCAGGTGAAGGTGGCTTCATTTTACAACAGCTCAGTGCTGGAAAATAATGTGCCGTCCATTACATCACTTTCATTTGATT
CAAAGGAGCTTGGAGCAAGAGCCTGCAAGAATCTGCTCAGACAGATAGAGGGTGAAGAGACTGAGAACAGGACACTTCTG
CCGTATGAGGTAGTGTTAAAGGAGTCCACACAGTAA

Upstream 100 bases:

>100_bases
ACAAGTGTATGAAGATAGGTTATAATGAAAAGCAATAGAGTTGCGCAACAAATAAAAGTTGCTCAGTGATTAATCACATT
TAGATGAAAGAGGCGGCAGA

Downstream 100 bases:

>100_bases
ATTATATAAGTATGTAACTGTTTGGTAGATTCACAGTTACGAGCCGAAAGAAGTAAAAGCCGGAGCCGACAAATTGTCAG
ACTCTGGCTTTTGCTTTATA

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSNNITISDVAEALGVSKTTVSRAISGKGRIGAATRKRVLEYIQEHDYKPNVIARGLAQSKTFNICVVMPGDYALVDLPF
FQEAIMGIQEIAGMMEYDLLLCIGSGNDMAGLRRIIQNHKVDGVVLLRTMVDDPQVTFLQERRIPFVTAGSCKYKDVKQI
DHDHRSACRELTSIMLMRGMKNMALLGGSEDIVVNQTRYAGVVDAHEQFGKKINDNLVFLNLEGKAYVEKAVDDAIDRGC
DCLLCMDDAVCAQAMRRLRERHIKVPQQVKVASFYNSSVLENNVPSITSLSFDSKELGARACKNLLRQIEGEETENRTLL
PYEVVLKESTQ

Sequences:

>Translated_331_residues
MSNNITISDVAEALGVSKTTVSRAISGKGRIGAATRKRVLEYIQEHDYKPNVIARGLAQSKTFNICVVMPGDYALVDLPF
FQEAIMGIQEIAGMMEYDLLLCIGSGNDMAGLRRIIQNHKVDGVVLLRTMVDDPQVTFLQERRIPFVTAGSCKYKDVKQI
DHDHRSACRELTSIMLMRGMKNMALLGGSEDIVVNQTRYAGVVDAHEQFGKKINDNLVFLNLEGKAYVEKAVDDAIDRGC
DCLLCMDDAVCAQAMRRLRERHIKVPQQVKVASFYNSSVLENNVPSITSLSFDSKELGARACKNLLRQIEGEETENRTLL
PYEVVLKESTQ
>Mature_330_residues
SNNITISDVAEALGVSKTTVSRAISGKGRIGAATRKRVLEYIQEHDYKPNVIARGLAQSKTFNICVVMPGDYALVDLPFF
QEAIMGIQEIAGMMEYDLLLCIGSGNDMAGLRRIIQNHKVDGVVLLRTMVDDPQVTFLQERRIPFVTAGSCKYKDVKQID
HDHRSACRELTSIMLMRGMKNMALLGGSEDIVVNQTRYAGVVDAHEQFGKKINDNLVFLNLEGKAYVEKAVDDAIDRGCD
CLLCMDDAVCAQAMRRLRERHIKVPQQVKVASFYNSSVLENNVPSITSLSFDSKELGARACKNLLRQIEGEETENRTLLP
YEVVLKESTQ

Specific function: Transcriptional regulator involved in both the repression of carbohydrate utilization genes and in the positive regulation of genes involved in excretion of excess carbon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787580, Length=329, Percent_Identity=24.9240121580547, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1790715, Length=330, Percent_Identity=23.030303030303, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789068, Length=321, Percent_Identity=25.8566978193146, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787906, Length=335, Percent_Identity=26.2686567164179, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790369, Length=336, Percent_Identity=24.1071428571429, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789202, Length=292, Percent_Identity=26.7123287671233, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1790194, Length=321, Percent_Identity=23.0529595015576, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI48994940, Length=328, Percent_Identity=22.5609756097561, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787948, Length=327, Percent_Identity=22.9357798165138, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790689, Length=332, Percent_Identity=23.7951807228916, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006377
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36868; Mature: 36737

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNITISDVAEALGVSKTTVSRAISGKGRIGAATRKRVLEYIQEHDYKPNVIARGLAQS
CCCCEEHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCC
KTFNICVVMPGDYALVDLPFFQEAIMGIQEIAGMMEYDLLLCIGSGNDMAGLRRIIQNHK
CCEEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHCC
VDGVVLLRTMVDDPQVTFLQERRIPFVTAGSCKYKDVKQIDHDHRSACRELTSIMLMRGM
CCCEEEEEECCCCCCEEHHHHCCCCEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCC
KNMALLGGSEDIVVNQTRYAGVVDAHEQFGKKINDNLVFLNLEGKAYVEKAVDDAIDRGC
CHHEEECCCCCEEEECCHHCCHHHHHHHHCHHCCCCEEEEEECCHHHHHHHHHHHHHCCC
DCLLCMDDAVCAQAMRRLRERHIKVPQQVKVASFYNSSVLENNVPSITSLSFDSKELGAR
CEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCCCCCEECCCCHHHHHHH
ACKNLLRQIEGEETENRTLLPYEVVLKESTQ
HHHHHHHHHCCCCCCCCEECHHHHEECCCCC
>Mature Secondary Structure 
SNNITISDVAEALGVSKTTVSRAISGKGRIGAATRKRVLEYIQEHDYKPNVIARGLAQS
CCCEEHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCC
KTFNICVVMPGDYALVDLPFFQEAIMGIQEIAGMMEYDLLLCIGSGNDMAGLRRIIQNHK
CCEEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHCC
VDGVVLLRTMVDDPQVTFLQERRIPFVTAGSCKYKDVKQIDHDHRSACRELTSIMLMRGM
CCCEEEEEECCCCCCEEHHHHCCCCEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCC
KNMALLGGSEDIVVNQTRYAGVVDAHEQFGKKINDNLVFLNLEGKAYVEKAVDDAIDRGC
CHHEEECCCCCEEEECCHHCCHHHHHHHHCHHCCCCEEEEEECCHHHHHHHHHHHHHCCC
DCLLCMDDAVCAQAMRRLRERHIKVPQQVKVASFYNSSVLENNVPSITSLSFDSKELGAR
CEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCCCCCEECCCCHHHHHHH
ACKNLLRQIEGEETENRTLLPYEVVLKESTQ
HHHHHHHHHCCCCCCCCEECHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA