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The map label for this gene is lrpA [H]

Identifier: 238923557

GI number: 238923557

Start: 1089426

End: 1089869

Strand: Direct

Name: lrpA [H]

Synonym: EUBREC_1177

Alternate gene names: 238923557

Gene position: 1089426-1089869 (Clockwise)

Preceding gene: 238923556

Following gene: 238923558

Centisome position: 31.58

GC content: 42.57

Gene sequence:

>444_bases
ATGATTGATGAGAAAATAGTAGAGCTGCTACAGGAAAATGCACGTATAGCGATAAAGGAGATAGCGGCACAGGTGTTTTT
GTCATCACCGGCTGTAACAGCCAGAATAGAGAGATTGGAGAGCAAGGGAATCATAAAGGGCTATCATGCCGCTGTTGATT
CGGTTAATCTGGGCTATAAGATAAAGGCTTTTGTCAATCTGGACCTGGAGCCTGTACAAAAGGAAGAGTTTTATCCGTTT
ATTGAGAGTGTGGAGAATGTCATAGAGTGCAATTGTGTGACAGGAGAGTATTCTATGCTCATAGAGGTGGAGTTTTTGAA
TACGGAGGAGCTTGATGACTTTATCAACACTCTGCAGAAATTCGGCAAGACAAGTACACAGATAGTTTTTTCCACTCCTG
TTGAGCACAGAGGCCTGCCTGTACATTCAGGTTTTGATGCATAA

Upstream 100 bases:

>100_bases
GTTCAGATATTAGGTTATCTGCGCCCTCTTTTTTGTTGGAAAAATCACATTTACAAAAGAGAGGTTAGGAGGCGGTACAT
TGACTAAGAATGCATTGGAT

Downstream 100 bases:

>100_bases
GATGATATGAGAGTCAAAAGATATTTTGCATGATTGAATGAAGTGTGCTAAAATAGTTTGCAAAAATACTGACTGTTAAA
CATGATTGTGGATGCTTTGA

Product: putative transcriptional regulator protein, AsnC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MIDEKIVELLQENARIAIKEIAAQVFLSSPAVTARIERLESKGIIKGYHAAVDSVNLGYKIKAFVNLDLEPVQKEEFYPF
IESVENVIECNCVTGEYSMLIEVEFLNTEELDDFINTLQKFGKTSTQIVFSTPVEHRGLPVHSGFDA

Sequences:

>Translated_147_residues
MIDEKIVELLQENARIAIKEIAAQVFLSSPAVTARIERLESKGIIKGYHAAVDSVNLGYKIKAFVNLDLEPVQKEEFYPF
IESVENVIECNCVTGEYSMLIEVEFLNTEELDDFINTLQKFGKTSTQIVFSTPVEHRGLPVHSGFDA
>Mature_147_residues
MIDEKIVELLQENARIAIKEIAAQVFLSSPAVTARIERLESKGIIKGYHAAVDSVNLGYKIKAFVNLDLEPVQKEEFYPF
IESVENVIECNCVTGEYSMLIEVEFLNTEELDDFINTLQKFGKTSTQIVFSTPVEHRGLPVHSGFDA

Specific function: Negative regulation of glyA transcription and kinB- dependent sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=141, Percent_Identity=31.2056737588652, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 16525; Mature: 16525

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDEKIVELLQENARIAIKEIAAQVFLSSPAVTARIERLESKGIIKGYHAAVDSVNLGYK
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCEE
IKAFVNLDLEPVQKEEFYPFIESVENVIECNCVTGEYSMLIEVEFLNTEELDDFINTLQK
EEEEEECCCCCCCHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHH
FGKTSTQIVFSTPVEHRGLPVHSGFDA
HCCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIDEKIVELLQENARIAIKEIAAQVFLSSPAVTARIERLESKGIIKGYHAAVDSVNLGYK
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCEE
IKAFVNLDLEPVQKEEFYPFIESVENVIECNCVTGEYSMLIEVEFLNTEELDDFINTLQK
EEEEEECCCCCCCHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHH
FGKTSTQIVFSTPVEHRGLPVHSGFDA
HCCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902725; 9384377 [H]