Click here to switch to the map view.

The map label for this gene is ytcP [H]

Identifier: 238923429

GI number: 238923429

Start: 950460

End: 951368

Strand: Direct

Name: ytcP [H]

Synonym: EUBREC_1049

Alternate gene names: 238923429

Gene position: 950460-951368 (Clockwise)

Preceding gene: 238923428

Following gene: 238923430

Centisome position: 27.55

GC content: 37.84

Gene sequence:

>909_bases
ATGGCAGATATAACAGCAGGCTCTGTAAAGAGCAAAAAGAAAAAGAAGATAAGTATATTTCCAATTGTAAATTGCATCAT
TATGGTATTGTTTTTGATCATAACGCTTTATCCGGTGCTTAATACACTTGCGATATCGCTTAATGATGGTACAGATGCAT
TAAGAGGTGGAATTTACCTCTTACCAAGAAAGTTTACCTGGAAGAATTATATAACGGTTTTACAAAAAGATAATCTTATA
ACAGGAGCATACATTACTGTTGCCAGAACAATAATTGGAACAGTCTTAGCACTGGTGGCAAATGCAATCCTTGCTTTTAT
AGTCAGCAGAAAAAGATTTTTGTTCAAAAGAGGTTTATCCCTGTTTTGGGTTATCACAATGTATGTCAATGGTGGATTAA
TCCCTACCTTCCTCCTGTACAAGGGACTTGGGCTTACCAATAGTTTTTGGGTTTATGTAGTCCCTGGAATGGTCAGTGCG
TTTAACATGCTTGTTATCAGGACCTATATGAATGGAATTCCTGACAGCTTAGAGGAATCAGCGCAGCTTGACGGTGCAGG
ATATACCACCATTTTTCTGAAGATTTATTCACCTCTCTGCAAACCGGTATATGCGACAGTAGCTTTATTCGTAGCAGTAG
GACAGTGGAACTCATGGTTTGATGCAATGCTTTATAACCGTATGAATACAAAGCTTACTACATTACAGTATGAGCTTATG
AAGCTTCTTTCAGCTGTAACAAATCAGGGAGGATCAGCAGAAACATTGAAAAATGCTGTAGGTGCAGTTACACCTACCTC
AGTTCGTGCCGCAGCAACAATTATAACAATGCTTCCGATCATATGTATTTACCCGTTTTTACAGAAATACTTTGTTACAG
GACTTACACTTGGTGGAGTTAAAGAATAA

Upstream 100 bases:

>100_bases
GTATATTCAAGAGCGTGGTAAGTATAATTCTTATATTTATTGCAAATAAAATTGCCAAACATAATGGTGAAGAGCAGTTG
TTTTAAGGAGGTCTTGTACG

Downstream 100 bases:

>100_bases
ATATTTTTTTACAGGATGCCCGGCAGGATAACTGCCGGGTGTTTTTGTGTAAATGTTTATTTGAAAGGAGAATTTTCTTC
AAATCAGGAGCAAAATGAGA

Product: ABC transporter (permease)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MADITAGSVKSKKKKKISIFPIVNCIIMVLFLIITLYPVLNTLAISLNDGTDALRGGIYLLPRKFTWKNYITVLQKDNLI
TGAYITVARTIIGTVLALVANAILAFIVSRKRFLFKRGLSLFWVITMYVNGGLIPTFLLYKGLGLTNSFWVYVVPGMVSA
FNMLVIRTYMNGIPDSLEESAQLDGAGYTTIFLKIYSPLCKPVYATVALFVAVGQWNSWFDAMLYNRMNTKLTTLQYELM
KLLSAVTNQGGSAETLKNAVGAVTPTSVRAAATIITMLPIICIYPFLQKYFVTGLTLGGVKE

Sequences:

>Translated_302_residues
MADITAGSVKSKKKKKISIFPIVNCIIMVLFLIITLYPVLNTLAISLNDGTDALRGGIYLLPRKFTWKNYITVLQKDNLI
TGAYITVARTIIGTVLALVANAILAFIVSRKRFLFKRGLSLFWVITMYVNGGLIPTFLLYKGLGLTNSFWVYVVPGMVSA
FNMLVIRTYMNGIPDSLEESAQLDGAGYTTIFLKIYSPLCKPVYATVALFVAVGQWNSWFDAMLYNRMNTKLTTLQYELM
KLLSAVTNQGGSAETLKNAVGAVTPTSVRAAATIITMLPIICIYPFLQKYFVTGLTLGGVKE
>Mature_301_residues
ADITAGSVKSKKKKKISIFPIVNCIIMVLFLIITLYPVLNTLAISLNDGTDALRGGIYLLPRKFTWKNYITVLQKDNLIT
GAYITVARTIIGTVLALVANAILAFIVSRKRFLFKRGLSLFWVITMYVNGGLIPTFLLYKGLGLTNSFWVYVVPGMVSAF
NMLVIRTYMNGIPDSLEESAQLDGAGYTTIFLKIYSPLCKPVYATVALFVAVGQWNSWFDAMLYNRMNTKLTTLQYELMK
LLSAVTNQGGSAETLKNAVGAVTPTSVRAAATIITMLPIICIYPFLQKYFVTGLTLGGVKE

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=289, Percent_Identity=23.8754325259516, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33324; Mature: 33193

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADITAGSVKSKKKKKISIFPIVNCIIMVLFLIITLYPVLNTLAISLNDGTDALRGGIYL
CCCCCCCCCCHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHCCEEE
LPRKFTWKNYITVLQKDNLITGAYITVARTIIGTVLALVANAILAFIVSRKRFLFKRGLS
ECCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LFWVITMYVNGGLIPTFLLYKGLGLTNSFWVYVVPGMVSAFNMLVIRTYMNGIPDSLEES
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHH
AQLDGAGYTTIFLKIYSPLCKPVYATVALFVAVGQWNSWFDAMLYNRMNTKLTTLQYELM
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHH
KLLSAVTNQGGSAETLKNAVGAVTPTSVRAAATIITMLPIICIYPFLQKYFVTGLTLGGV
HHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KE
CC
>Mature Secondary Structure 
ADITAGSVKSKKKKKISIFPIVNCIIMVLFLIITLYPVLNTLAISLNDGTDALRGGIYL
CCCCCCCCCHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHCCEEE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CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]