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The map label for this gene is ydeM [C]

Identifier: 238923391

GI number: 238923391

Start: 908638

End: 910008

Strand: Direct

Name: ydeM [C]

Synonym: EUBREC_1011

Alternate gene names: 238923391

Gene position: 908638-910008 (Clockwise)

Preceding gene: 238923390

Following gene: 238923392

Centisome position: 26.34

GC content: 45.08

Gene sequence:

>1371_bases
GTGGTTCATCAGTACAGGAACAACGGCTATAATATTGTCTTAGATGTCAACAGTGGCGCAATCCATGTGGTGGATGATGT
CACATATGACGTTATTGAGCTGTTTGAGGACAACTCAGCTAAGGAGATTATTGAAAAGCTTGTGGACAGGTATCCACAGA
CGGAGATAGAAGAAGCAATACAGGAAGTAAATGAGCTTAAGGATAATGAAGAGCTCTTCACAGAAGATACATACAAAGAG
CGTATCATAGATTTCAAGAAGCGCCAGACAGTTGTAAAGGCACTTTGCCTTCACATCGCGCACGACTGCAACCTTGCCTG
CAGATATTGTTTTGCAGAGGAGGGCGAGTATCACGGCAGACGAGCTCTCATGAGCTACGAGACAGGAAAACAGGCACTTG
ATTTCCTGATTGCCAATTCAGGCAGCAGAAGAAACTTAGAGGTAGACTTCTTTGGAGGAGAGCCTCTCATGAACTGGGAT
GTGGTGAAGCAGCTTGTGGCATATGGAAGAGAGCAGGAGAAGCTTCATGACAAGCATTTCAGGTTCACACTCACCACAAA
CGGTGTGCTCTTAAATGACGAGATTATGGAGTTCGCCAACAAAGAGATGGATAATGTAGTTCTTAGTATAGACGGACGCA
AGGAGGTTCATGACCGTATGAGACCTTTCAGAAAGGGTGCCGGCAGTTATGACCTTATTGTTCCGAAATTCCAGAAGTTT
GCAGAGAGCAGACATCAGGACAAGTACTATGTGAGAGGTACATACACACATTTCAATACTGATTTTTCAAAGGATGTGCT
TCATCTGGCTGATTTAGGCTTCAAACAGATTTCGGTTGAGCCTGTGGTGGCACAGCCTACAGATGAGTATGCACTTAAGG
AATCTGATTTACCTGTGCTCTTTGATGAGTACGACAGACTTGCAGCAGAGATGGTAAAGAGAAACAAGGCAGGAAACGGC
TTCAATTTCTTCCATTTTATGATAGATTTAGAGGGAGGACCTTGTGTATATAAGCGTCTTTCCGGTTGTGGCTCAGGAAC
TGAGTACCTGGCAGTGACTCCATGGGGAGATTTATATCCATGCCACCAGTTTGTGGGCAATGAGGACTTCCTTATGGGTA
ATGTCTGGGATGGCATCAAGGCCACTGACATCCAGGATGAGTTTAAGTGCTGTAATGTTTATGCCAAGGAAAAATGTCGC
AACTGTTTTGCCAGATTCTATTGCAGCGGTGGCTGTGCCGCCAACTCATACAACTTCCACGGCACAATCACTGATGCCTA
TGATTTAGGCTGCGAGCTGCAGAAGAAGCGTATAGAGTGCGCTATCATGATTAAGGCAGCAGAGGCTGATATGGCAGATG
ATGCACAATAA

Upstream 100 bases:

>100_bases
TAGTCATAGGTGAAGCGGATTTAAAGAGTGTGCGCTGATAGGTGCACACTCTTTTCGCAGTGTAATTTTAAAATGTGTAT
AGAAAGAGAGGAATATTGTA

Downstream 100 bases:

>100_bases
TTTGAATTTGTCACGGGAAACGGATAGCGGTATTTGTGACCCGTGTGCGAATATATTTGCCATCTGTATACCTATATGGA
TGGTAGCAAAATGACAGGAA

Product: arylsulfatase regulator (Fe-S oxidoreductase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MVHQYRNNGYNIVLDVNSGAIHVVDDVTYDVIELFEDNSAKEIIEKLVDRYPQTEIEEAIQEVNELKDNEELFTEDTYKE
RIIDFKKRQTVVKALCLHIAHDCNLACRYCFAEEGEYHGRRALMSYETGKQALDFLIANSGSRRNLEVDFFGGEPLMNWD
VVKQLVAYGREQEKLHDKHFRFTLTTNGVLLNDEIMEFANKEMDNVVLSIDGRKEVHDRMRPFRKGAGSYDLIVPKFQKF
AESRHQDKYYVRGTYTHFNTDFSKDVLHLADLGFKQISVEPVVAQPTDEYALKESDLPVLFDEYDRLAAEMVKRNKAGNG
FNFFHFMIDLEGGPCVYKRLSGCGSGTEYLAVTPWGDLYPCHQFVGNEDFLMGNVWDGIKATDIQDEFKCCNVYAKEKCR
NCFARFYCSGGCAANSYNFHGTITDAYDLGCELQKKRIECAIMIKAAEADMADDAQ

Sequences:

>Translated_456_residues
MVHQYRNNGYNIVLDVNSGAIHVVDDVTYDVIELFEDNSAKEIIEKLVDRYPQTEIEEAIQEVNELKDNEELFTEDTYKE
RIIDFKKRQTVVKALCLHIAHDCNLACRYCFAEEGEYHGRRALMSYETGKQALDFLIANSGSRRNLEVDFFGGEPLMNWD
VVKQLVAYGREQEKLHDKHFRFTLTTNGVLLNDEIMEFANKEMDNVVLSIDGRKEVHDRMRPFRKGAGSYDLIVPKFQKF
AESRHQDKYYVRGTYTHFNTDFSKDVLHLADLGFKQISVEPVVAQPTDEYALKESDLPVLFDEYDRLAAEMVKRNKAGNG
FNFFHFMIDLEGGPCVYKRLSGCGSGTEYLAVTPWGDLYPCHQFVGNEDFLMGNVWDGIKATDIQDEFKCCNVYAKEKCR
NCFARFYCSGGCAANSYNFHGTITDAYDLGCELQKKRIECAIMIKAAEADMADDAQ
>Mature_456_residues
MVHQYRNNGYNIVLDVNSGAIHVVDDVTYDVIELFEDNSAKEIIEKLVDRYPQTEIEEAIQEVNELKDNEELFTEDTYKE
RIIDFKKRQTVVKALCLHIAHDCNLACRYCFAEEGEYHGRRALMSYETGKQALDFLIANSGSRRNLEVDFFGGEPLMNWD
VVKQLVAYGREQEKLHDKHFRFTLTTNGVLLNDEIMEFANKEMDNVVLSIDGRKEVHDRMRPFRKGAGSYDLIVPKFQKF
AESRHQDKYYVRGTYTHFNTDFSKDVLHLADLGFKQISVEPVVAQPTDEYALKESDLPVLFDEYDRLAAEMVKRNKAGNG
FNFFHFMIDLEGGPCVYKRLSGCGSGTEYLAVTPWGDLYPCHQFVGNEDFLMGNVWDGIKATDIQDEFKCCNVYAKEKCR
NCFARFYCSGGCAANSYNFHGTITDAYDLGCELQKKRIECAIMIKAAEADMADDAQ

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=333, Percent_Identity=25.2252252252252, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 52335; Mature: 52335

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHQYRNNGYNIVLDVNSGAIHVVDDVTYDVIELFEDNSAKEIIEKLVDRYPQTEIEEAI
CCCCEECCCCEEEEEECCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
QEVNELKDNEELFTEDTYKERIIDFKKRQTVVKALCLHIAHDCNLACRYCFAEEGEYHGR
HHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH
RALMSYETGKQALDFLIANSGSRRNLEVDFFGGEPLMNWDVVKQLVAYGREQEKLHDKHF
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCEE
RFTLTTNGVLLNDEIMEFANKEMDNVVLSIDGRKEVHDRMRPFRKGAGSYDLIVPKFQKF
EEEEEECCEEECHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEECHHHHHH
AESRHQDKYYVRGTYTHFNTDFSKDVLHLADLGFKQISVEPVVAQPTDEYALKESDLPVL
HHHCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCEEECCCEEECCCHHHHCCCCCCCCH
FDEYDRLAAEMVKRNKAGNGFNFFHFMIDLEGGPCVYKRLSGCGSGTEYLAVTPWGDLYP
HHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCEEEECCCCCCCH
CHQFVGNEDFLMGNVWDGIKATDIQDEFKCCNVYAKEKCRNCFARFYCSGGCAANSYNFH
HHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
GTITDAYDLGCELQKKRIECAIMIKAAEADMADDAQ
EEECHHHHCCCHHHHCCCEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MVHQYRNNGYNIVLDVNSGAIHVVDDVTYDVIELFEDNSAKEIIEKLVDRYPQTEIEEAI
CCCCEECCCCEEEEEECCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
QEVNELKDNEELFTEDTYKERIIDFKKRQTVVKALCLHIAHDCNLACRYCFAEEGEYHGR
HHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH
RALMSYETGKQALDFLIANSGSRRNLEVDFFGGEPLMNWDVVKQLVAYGREQEKLHDKHF
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCEE
RFTLTTNGVLLNDEIMEFANKEMDNVVLSIDGRKEVHDRMRPFRKGAGSYDLIVPKFQKF
EEEEEECCEEECHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEECHHHHHH
AESRHQDKYYVRGTYTHFNTDFSKDVLHLADLGFKQISVEPVVAQPTDEYALKESDLPVL
HHHCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCEEECCCEEECCCHHHHCCCCCCCCH
FDEYDRLAAEMVKRNKAGNGFNFFHFMIDLEGGPCVYKRLSGCGSGTEYLAVTPWGDLYP
HHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCEEEECCCCCCCH
CHQFVGNEDFLMGNVWDGIKATDIQDEFKCCNVYAKEKCRNCFARFYCSGGCAANSYNFH
HHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
GTITDAYDLGCELQKKRIECAIMIKAAEADMADDAQ
EEECHHHHCCCHHHHCCCEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]