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The map label for this gene is ydhC [H]

Identifier: 238923380

GI number: 238923380

Start: 895507

End: 896193

Strand: Direct

Name: ydhC [H]

Synonym: EUBREC_1000

Alternate gene names: 238923380

Gene position: 895507-896193 (Clockwise)

Preceding gene: 238923379

Following gene: 238923381

Centisome position: 25.96

GC content: 46.0

Gene sequence:

>687_bases
ATGACTGATAATTTAACTTTAAATATGGATGCATATCTGCCACTGCGTGATGTGGTTTTTAACACACTTCGTGAGGCAAT
TTTAAAGGGTGAGCTCAAGCCGGGAGAGAGACTTATGGAGCTGCAGCTTGCGTCAAAGCTTGGAGTCAGCCGTACACCTA
TACGTGAAGCAATCAGAATGCTTGAGCAGGAGGGGCTTGCAGTCACAATGCCGAGAAAGGGCGCAGAGGTTGCCAAGATG
ACTCTTAAGGATATGGAGGATGTGCTTGAGGTGAGAGAGGCTCTCGATGAGCTTGCAGCCAAAATAGCCTGTAAGAAAAT
CAGTGATGAGCAGCTTGCGAATCTAAAAACCATAAAGGACGAGTTCAAGAGGAGCATGGATTCAGGAGATGTGAAAAAGA
TAGCTGAGGAGGATGTGAAGTTTCACGATGCTATCTATGAGGCAACCAGCAATGCGAAGCTTGTATCTATGATGAACAAT
ATCCGCGAGCAGATGTACCGCTACAGAGTGGAGTATTTGAAGGACCCAAAGAATTATCCGATGCTTGTGAAGGAGCATGA
CGCCATCTACAGGGCGCTTGAGGCAAGAAATATGGAGCTTGTGACTACAGAAATGCATACGCATGTGGCCAATCAGGCGG
TTGCTGTGAAGGCTGTGATACAAAAGCAGGATGAAGAGAAGAAATAA

Upstream 100 bases:

>100_bases
TAATCGCAAATAACGTGATATCCGGATAGCACAGCGGGTGCTTTATAGTTACTTTTTTCTTATATGTGAGAATGATAATA
CAAGAGATAGGAGAAGTTTG

Downstream 100 bases:

>100_bases
AACAGAAATATAACAAGATTATAGCAGACAAAGATAATAAAATACAAAATAATATAACAAAACCAGGGGCTGCCGGTTGC
ACTGACGTGTGAACGGCGGC

Product: GntR domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTDNLTLNMDAYLPLRDVVFNTLREAILKGELKPGERLMELQLASKLGVSRTPIREAIRMLEQEGLAVTMPRKGAEVAKM
TLKDMEDVLEVREALDELAAKIACKKISDEQLANLKTIKDEFKRSMDSGDVKKIAEEDVKFHDAIYEATSNAKLVSMMNN
IREQMYRYRVEYLKDPKNYPMLVKEHDAIYRALEARNMELVTTEMHTHVANQAVAVKAVIQKQDEEKK

Sequences:

>Translated_228_residues
MTDNLTLNMDAYLPLRDVVFNTLREAILKGELKPGERLMELQLASKLGVSRTPIREAIRMLEQEGLAVTMPRKGAEVAKM
TLKDMEDVLEVREALDELAAKIACKKISDEQLANLKTIKDEFKRSMDSGDVKKIAEEDVKFHDAIYEATSNAKLVSMMNN
IREQMYRYRVEYLKDPKNYPMLVKEHDAIYRALEARNMELVTTEMHTHVANQAVAVKAVIQKQDEEKK
>Mature_227_residues
TDNLTLNMDAYLPLRDVVFNTLREAILKGELKPGERLMELQLASKLGVSRTPIREAIRMLEQEGLAVTMPRKGAEVAKMT
LKDMEDVLEVREALDELAAKIACKKISDEQLANLKTIKDEFKRSMDSGDVKKIAEEDVKFHDAIYEATSNAKLVSMMNNI
REQMYRYRVEYLKDPKNYPMLVKEHDAIYRALEARNMELVTTEMHTHVANQAVAVKAVIQKQDEEKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=212, Percent_Identity=23.1132075471698, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87081914, Length=178, Percent_Identity=28.6516853932584, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994961, Length=181, Percent_Identity=28.1767955801105, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786303, Length=216, Percent_Identity=28.7037037037037, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26145; Mature: 26014

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNLTLNMDAYLPLRDVVFNTLREAILKGELKPGERLMELQLASKLGVSRTPIREAIRM
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
LEQEGLAVTMPRKGAEVAKMTLKDMEDVLEVREALDELAAKIACKKISDEQLANLKTIKD
HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
EFKRSMDSGDVKKIAEEDVKFHDAIYEATSNAKLVSMMNNIREQMYRYRVEYLKDPKNYP
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
MLVKEHDAIYRALEARNMELVTTEMHTHVANQAVAVKAVIQKQDEEKK
CEEHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDNLTLNMDAYLPLRDVVFNTLREAILKGELKPGERLMELQLASKLGVSRTPIREAIRM
CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
LEQEGLAVTMPRKGAEVAKMTLKDMEDVLEVREALDELAAKIACKKISDEQLANLKTIKD
HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
EFKRSMDSGDVKKIAEEDVKFHDAIYEATSNAKLVSMMNNIREQMYRYRVEYLKDPKNYP
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
MLVKEHDAIYRALEARNMELVTTEMHTHVANQAVAVKAVIQKQDEEKK
CEEHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]