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The map label for this gene is ydiC [H]

Identifier: 238923240

GI number: 238923240

Start: 757945

End: 758658

Strand: Direct

Name: ydiC [H]

Synonym: EUBREC_0837

Alternate gene names: 238923240

Gene position: 757945-758658 (Clockwise)

Preceding gene: 238923239

Following gene: 238923241

Centisome position: 21.97

GC content: 46.78

Gene sequence:

>714_bases
ATGAAGATACTTGCGCTTGACAGCTCAGGGCTTGTGGCCAGTGTGGCTGTCGTATCGGACGATAATCTGATAGGAGAATA
CACGATAAATTATAAAAAGACACATTCACAGACGCTTCTTCCGATGCTTGATGAGGTGGCTAAGATGACAGAGCTTGACC
TTAAGACTATAGATTTTATTGCAGTCTCAGCAGGACCGGGATCGTTCACAGGGCTTCGCATAGGCTCTGCGACGGCGAAG
GGGCTTGCAATGGCACTGGATAAGCAGATAGTTTCTGTACCTACCGTAGATGCACTAGCATACAATCTGTGGGGCAGTGC
AGATGTTGTGTGTCCGCTTATGGATGCAAGAAGACAGCAGACCTATACAGGGCTGTATGATTTTACTGATGGCAGGATGA
ATACCATTTTACCGCAGTGCGTAGTGATGATAGAAGAGATAGTTGACAAAATCAATGAGCTCGGCCGCAGGGTGATTTTC
CTTGGAGACGGAGTGGATGTGTTCAGGGATTATATTAATGAGCACGTAAAGGTGGACTATGACTTTGCACCTGCCATGTG
CAATAAGCAAAGAGCATCGGCTGTAGCATGTCTTGGACAGGTGCTCTATGAGCAGGGCAGGGCAGAAAATGCAGCAGACC
ATAAGCCTGAGTATCTCAGATTATCACAGGCGGAGAGAGAGAGACAGGAAAAGGAGAGAGATTTTAGAATATGA

Upstream 100 bases:

>100_bases
TTGAGGAGATACTCCCAAATAAGAGAAAAGAGATTACTATTGAAAAAGACCTGGAAAAAGGCTTTGACTATAGAAAAATA
ACAATAAAAGAGGTTTTATA

Downstream 100 bases:

>100_bases
TAATAAGACCCATGGAGCCGGAGGATGCAGACTCGGTGGCGCAGATAGAAAAAGACAGCTTCACACAGCCCTGGAGCAGA
CAGGGATTTTTGGATGCCAT

Product: O-sialoglycoprotein endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MKILALDSSGLVASVAVVSDDNLIGEYTINYKKTHSQTLLPMLDEVAKMTELDLKTIDFIAVSAGPGSFTGLRIGSATAK
GLAMALDKQIVSVPTVDALAYNLWGSADVVCPLMDARRQQTYTGLYDFTDGRMNTILPQCVVMIEEIVDKINELGRRVIF
LGDGVDVFRDYINEHVKVDYDFAPAMCNKQRASAVACLGQVLYEQGRAENAADHKPEYLRLSQAERERQEKERDFRI

Sequences:

>Translated_237_residues
MKILALDSSGLVASVAVVSDDNLIGEYTINYKKTHSQTLLPMLDEVAKMTELDLKTIDFIAVSAGPGSFTGLRIGSATAK
GLAMALDKQIVSVPTVDALAYNLWGSADVVCPLMDARRQQTYTGLYDFTDGRMNTILPQCVVMIEEIVDKINELGRRVIF
LGDGVDVFRDYINEHVKVDYDFAPAMCNKQRASAVACLGQVLYEQGRAENAADHKPEYLRLSQAERERQEKERDFRI
>Mature_237_residues
MKILALDSSGLVASVAVVSDDNLIGEYTINYKKTHSQTLLPMLDEVAKMTELDLKTIDFIAVSAGPGSFTGLRIGSATAK
GLAMALDKQIVSVPTVDALAYNLWGSADVVCPLMDARRQQTYTGLYDFTDGRMNTILPQCVVMIEEIVDKINELGRRVIF
LGDGVDVFRDYINEHVKVDYDFAPAMCNKQRASAVACLGQVLYEQGRAENAADHKPEYLRLSQAERERQEKERDFRI

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=235, Percent_Identity=26.3829787234043, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 26302; Mature: 26302

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILALDSSGLVASVAVVSDDNLIGEYTINYKKTHSQTLLPMLDEVAKMTELDLKTIDFI
CEEEEECCCCCEEEEEEEECCCEEEEEEECEECCCHHHHHHHHHHHHHHHHCCCEEEEEE
AVSAGPGSFTGLRIGSATAKGLAMALDKQIVSVPTVDALAYNLWGSADVVCPLMDARRQQ
EEECCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEECHHHHHHHH
TYTGLYDFTDGRMNTILPQCVVMIEEIVDKINELGRRVIFLGDGVDVFRDYINEHVKVDY
HHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEEEC
DFAPAMCNKQRASAVACLGQVLYEQGRAENAADHKPEYLRLSQAERERQEKERDFRI
CCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKILALDSSGLVASVAVVSDDNLIGEYTINYKKTHSQTLLPMLDEVAKMTELDLKTIDFI
CEEEEECCCCCEEEEEEEECCCEEEEEEECEECCCHHHHHHHHHHHHHHHHCCCEEEEEE
AVSAGPGSFTGLRIGSATAKGLAMALDKQIVSVPTVDALAYNLWGSADVVCPLMDARRQQ
EEECCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEECHHHHHHHH
TYTGLYDFTDGRMNTILPQCVVMIEEIVDKINELGRRVIFLGDGVDVFRDYINEHVKVDY
HHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEEEC
DFAPAMCNKQRASAVACLGQVLYEQGRAENAADHKPEYLRLSQAERERQEKERDFRI
CCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]