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The map label for this gene is tdcF [H]

Identifier: 238923116

GI number: 238923116

Start: 654376

End: 654750

Strand: Direct

Name: tdcF [H]

Synonym: EUBREC_0709

Alternate gene names: 238923116

Gene position: 654376-654750 (Clockwise)

Preceding gene: 238923115

Following gene: 238923117

Centisome position: 18.97

GC content: 44.27

Gene sequence:

>375_bases
ATGAAAAACGTTATCAATACAGACAAGGCACCGGCAGCAATAGGACCATATTCACAGGCTATCGAGGTAAATGGTATGGT
ATATACTTCCGGAGTGATACCGGTAGTTCCGGAGACCGGTGAGATTCCTGAGGGCTCACAGGCACAGGCAAAGCAGGCAT
TTACAAATCTGTCACATCTGCTTGAGGCAGCAGGAACAAGCATGGATAATGTGGTAAAGACTACAGTTTTCATCAAGGAG
ATGAATGACTTCGGTGCAATAAATGAGGTATATGCCACATTTTTTAACGGAGCATACCCTGCAAGAAGCTGTGTTGAGGT
TGCAAGGCTTCCAAAGGATGTAATGCTTGAGGTTGAGGCTATTGCTGTAAAATAA

Upstream 100 bases:

>100_bases
TTTATATAAGGAAAGAAAGATTGATCTCACAGATGGCAAAATCCGTCTTAAGAAATAACAGTCTTTTTAATAAATTTTAA
CAGGAAAGAAGGACAATAAC

Downstream 100 bases:

>100_bases
AATTATTACATAAGTATTTCATGCGACATAAGTCCTATTCGTTGGAAAAAATCAAGATTTTCTTAAGAATTCACTAAGAA
AACGTTGACATATATATGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MKNVINTDKAPAAIGPYSQAIEVNGMVYTSGVIPVVPETGEIPEGSQAQAKQAFTNLSHLLEAAGTSMDNVVKTTVFIKE
MNDFGAINEVYATFFNGAYPARSCVEVARLPKDVMLEVEAIAVK

Sequences:

>Translated_124_residues
MKNVINTDKAPAAIGPYSQAIEVNGMVYTSGVIPVVPETGEIPEGSQAQAKQAFTNLSHLLEAAGTSMDNVVKTTVFIKE
MNDFGAINEVYATFFNGAYPARSCVEVARLPKDVMLEVEAIAVK
>Mature_124_residues
MKNVINTDKAPAAIGPYSQAIEVNGMVYTSGVIPVVPETGEIPEGSQAQAKQAFTNLSHLLEAAGTSMDNVVKTTVFIKE
MNDFGAINEVYATFFNGAYPARSCVEVARLPKDVMLEVEAIAVK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=46.4, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=55.1181102362205, Blast_Score=150, Evalue=2e-38,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=54.3307086614173, Blast_Score=147, Evalue=2e-37,
Organism=Escherichia coli, GI1787245, Length=122, Percent_Identity=29.5081967213115, Blast_Score=70, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=45.0819672131148, Blast_Score=121, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=45.0819672131148, Blast_Score=121, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=45.0819672131148, Blast_Score=121, Evalue=9e-29,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=43.3333333333333, Blast_Score=105, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=46.6019417475728, Blast_Score=94, Evalue=4e-21,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=43.5483870967742, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13252; Mature: 13252

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVINTDKAPAAIGPYSQAIEVNGMVYTSGVIPVVPETGEIPEGSQAQAKQAFTNLSHL
CCCCCCCCCCCCCCCCCCCEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
LEAAGTSMDNVVKTTVFIKEMNDFGAINEVYATFFNGAYPARSCVEVARLPKDVMLEVEA
HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHEEEHEE
IAVK
EECC
>Mature Secondary Structure
MKNVINTDKAPAAIGPYSQAIEVNGMVYTSGVIPVVPETGEIPEGSQAQAKQAFTNLSHL
CCCCCCCCCCCCCCCCCCCEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
LEAAGTSMDNVVKTTVFIKEMNDFGAINEVYATFFNGAYPARSCVEVARLPKDVMLEVEA
HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHEEEHEE
IAVK
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]