Click here to switch to the map view.

The map label for this gene is cvfB [H]

Identifier: 238923115

GI number: 238923115

Start: 653497

End: 654333

Strand: Direct

Name: cvfB [H]

Synonym: EUBREC_0708

Alternate gene names: 238923115

Gene position: 653497-654333 (Clockwise)

Preceding gene: 238923114

Following gene: 238923116

Centisome position: 18.94

GC content: 43.85

Gene sequence:

>837_bases
ATGAGATTAGGAGAATATCAGGAGCTTGTATGTGTAAAGAAGGTTGATTTTGGCATATATCTGTCAACATCTTCGGCTTC
GGAGGAAAGGGTACTGCTTCCGGCAAAGCAGATTCCGGATGGAGTAAAGCAGGGGGATAAGCTTAAGGTCTTTGTATACA
AGGACTCTAACGACAGACTTATTGCTACGACAAACGAGCCAAAGCTGACACTTGGAGGTTTATCAGTGCTTACTGTCAAG
GAGGTGACTAAAATAGGGGCGTTCCTTGACTGGGGGCTTGAAAAGGACCTGTTTCTTCCTTACAAGGAGATGGTCAGAAA
GGTCAGCGCCGGAGATGAGATACTTGTTACATTATACATAGATAAAAGCCAGAGGCTTTGCGCTACCACAAAGGGTATTT
ACCATATGCTGAGCACCGATTCGCCATACAAAAAGGACGATATGGTTTCAGGCCGAGTGTATGATTTTAGCGACAATTTC
GGTACATTTATCGCTGTGGATGACAAATATTCAGCCAAGATACCGGTTTTTGAGAATGCCGCTTATCTGAAGCTTGGAGA
TGTGATAGAGGCAAAGGTCACTGATGTCAAGGCGGATGGCAAGCTGGACCTGACAATGAGGGAAAAGGCATATATTCAGA
TGGATTCCGACTCTGAAAAGATCCTTGAGCTGCTTGATTCATACGCAGGTGTGCTTCCGTTTTCGGAAAAGGCAAGCCCG
GAGGTAATCAAGAGAGAAACAGGACTTAGCAAAAATGCATTCAAGCGTGCAGTTGGTCATTTATATAAGGAAAGAAAGAT
TGATCTCACAGATGGCAAAATCCGTCTTAAGAAATAA

Upstream 100 bases:

>100_bases
ATTCGGTGGTGGAGTTTTTGAGTAAGCCGGTACCGGGAAAATAATTATAATTCCATTATTTAACAACGATACAGTTTTGA
TACAGAAAGGACGGAAAAAC

Downstream 100 bases:

>100_bases
CAGTCTTTTTAATAAATTTTAACAGGAAAGAAGGACAATAACATGAAAAACGTTATCAATACAGACAAGGCACCGGCAGC
AATAGGACCATATTCACAGG

Product: S1 RNA binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MRLGEYQELVCVKKVDFGIYLSTSSASEERVLLPAKQIPDGVKQGDKLKVFVYKDSNDRLIATTNEPKLTLGGLSVLTVK
EVTKIGAFLDWGLEKDLFLPYKEMVRKVSAGDEILVTLYIDKSQRLCATTKGIYHMLSTDSPYKKDDMVSGRVYDFSDNF
GTFIAVDDKYSAKIPVFENAAYLKLGDVIEAKVTDVKADGKLDLTMREKAYIQMDSDSEKILELLDSYAGVLPFSEKASP
EVIKRETGLSKNAFKRAVGHLYKERKIDLTDGKIRLKK

Sequences:

>Translated_278_residues
MRLGEYQELVCVKKVDFGIYLSTSSASEERVLLPAKQIPDGVKQGDKLKVFVYKDSNDRLIATTNEPKLTLGGLSVLTVK
EVTKIGAFLDWGLEKDLFLPYKEMVRKVSAGDEILVTLYIDKSQRLCATTKGIYHMLSTDSPYKKDDMVSGRVYDFSDNF
GTFIAVDDKYSAKIPVFENAAYLKLGDVIEAKVTDVKADGKLDLTMREKAYIQMDSDSEKILELLDSYAGVLPFSEKASP
EVIKRETGLSKNAFKRAVGHLYKERKIDLTDGKIRLKK
>Mature_278_residues
MRLGEYQELVCVKKVDFGIYLSTSSASEERVLLPAKQIPDGVKQGDKLKVFVYKDSNDRLIATTNEPKLTLGGLSVLTVK
EVTKIGAFLDWGLEKDLFLPYKEMVRKVSAGDEILVTLYIDKSQRLCATTKGIYHMLSTDSPYKKDDMVSGRVYDFSDNF
GTFIAVDDKYSAKIPVFENAAYLKLGDVIEAKVTDVKADGKLDLTMREKAYIQMDSDSEKILELLDSYAGVLPFSEKASP
EVIKRETGLSKNAFKRAVGHLYKERKIDLTDGKIRLKK

Specific function: Unknown

COG id: COG2996

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CvfB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014464 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31222; Mature: 31222

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGEYQELVCVKKVDFGIYLSTSSASEERVLLPAKQIPDGVKQGDKLKVFVYKDSNDRL
CCCCCHHHEEEEEEECEEEEEECCCCCCCEEEECHHHCCCCCCCCCEEEEEEEECCCCEE
IATTNEPKLTLGGLSVLTVKEVTKIGAFLDWGLEKDLFLPYKEMVRKVSAGDEILVTLYI
EEECCCCEEEECCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEEE
DKSQRLCATTKGIYHMLSTDSPYKKDDMVSGRVYDFSDNFGTFIAVDDKYSAKIPVFENA
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEECCC
AYLKLGDVIEAKVTDVKADGKLDLTMREKAYIQMDSDSEKILELLDSYAGVLPFSEKASP
EEEEECCEEEEEEEEEECCCEEEEEEECEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCH
EVIKRETGLSKNAFKRAVGHLYKERKIDLTDGKIRLKK
HHHHHHCCCCHHHHHHHHHHHHHHCEEEECCCEEEECC
>Mature Secondary Structure
MRLGEYQELVCVKKVDFGIYLSTSSASEERVLLPAKQIPDGVKQGDKLKVFVYKDSNDRL
CCCCCHHHEEEEEEECEEEEEECCCCCCCEEEECHHHCCCCCCCCCEEEEEEEECCCCEE
IATTNEPKLTLGGLSVLTVKEVTKIGAFLDWGLEKDLFLPYKEMVRKVSAGDEILVTLYI
EEECCCCEEEECCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEEE
DKSQRLCATTKGIYHMLSTDSPYKKDDMVSGRVYDFSDNFGTFIAVDDKYSAKIPVFENA
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEECCC
AYLKLGDVIEAKVTDVKADGKLDLTMREKAYIQMDSDSEKILELLDSYAGVLPFSEKASP
EEEEECCEEEEEEEEEECCCEEEEEEECEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCH
EVIKRETGLSKNAFKRAVGHLYKERKIDLTDGKIRLKK
HHHHHHCCCCHHHHHHHHHHHHHHCEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA