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The map label for this gene is treC [C]

Identifier: 238922957

GI number: 238922957

Start: 505208

End: 506902

Strand: Direct

Name: treC [C]

Synonym: EUBREC_0546

Alternate gene names: 238922957

Gene position: 505208-506902 (Clockwise)

Preceding gene: 238922956

Following gene: 238922959

Centisome position: 14.65

GC content: 43.66

Gene sequence:

>1695_bases
ATGATTAATAATAAAATAGGCGGCCACAACATGGTCGGCAGGGCTGTGAATAGATTGGCGGGCAGGTTGACTGCTGTGGC
ATTGACGGCAGCTATGGCGGTGTCAATGCTTGCGGGATGTGCTGCGGGTGGAAAGAATACCGAGACGGCAGCAAAGAAGG
AGTACAAGCCTTCCGCTATGGAGCAGATGAATGCGAAAAATGATCCTAATGTGATTCAGGACAATTACAGGACCTGCTAT
GAGGTGTTCGTATACAGCTTTTTTGACAGTGACGGTGACGGCATTGGGGATTTAAAGGGACTTACAGAGAAGCTTGACTA
TATCGAGGGACTTGGCTGCAATGAAATCTGGATGATGCCTATTATGCCTTCTCCTTCATACCACAAGTATGATATTACGG
ATTATATGAATATTGACAAGCAGTATGGTACTCTGGATGATTTTGATGCGCTTATTACGGAGTGTCACAAGAGAAACATC
AATGTGATTATTGACTTTGTAATAAATCACACATCTAACGAGCATCCGTGGTTTAAGGCGGCTGCTGATTATATCAAGTC
GCTTCCTGATGGGGCAGAGCCGGATTCTTCGGAATGTCCTTATGTTGATTACTATAATTTTAGCAAAACCAATACCGGAG
GCTACAACCAGCTGCCGGGCACGAATTGGTATTACGAGTCACAGTTTGTAGACAGCATGCCTGACCTTAACCTGCAGAGT
GAAGCTGTAAGAGGGGAGATTGACAAGGTTACATCCTTCTGGCTTGACCGCGGCGTAGATGGCTTCAGACTGGATGCTGT
GATTTATTACAATAATAATAACCAGACTGAGACTATAGATGACCTCACATGGCTTGTAAACAATGTGAAGAGCAAAAAGG
CCGATGCTTATATGGTTGGTGAGGGCTGGACTACATACAGAGAGTATGCGAAGTATTATAAGAGTGGAATTGACAGTATG
TTCAACTTTGATTTTTCACAGCAGGATGGATATATTGGAAAGGTGTTAAACGGTACAGCAAATCATGGTGCCAGCACATA
CGGCAATGCTCTGGTTGATGTGGAAAATGAGATAAAGAAGTATACAGACTCATACATTGATGCACCGTTCTATACAAATC
ATGATATGGGACGCAGCGCAGGGTACTACAACGGAGATAATGCCGAGGAGAAAACCAAGATGGCGCAGGCCATGAATCTT
CTTATGCCCGGAAATGCTTTTCTGTATTATGGAGAGGAAATCGGCATGAGAGGCACAGCCAATGATGAGACGAAGCGTCT
TGCCATGAGATGGAGCGGGGATTCAAAAGCTAAGGGAATGTGTGTGGGACCTCAGAATGCAGAAGAAACCGAGCAGACAT
ATGATACCCTTGATAAGCAGATGGAGGATCCATACTCTATTTACAACTTTGTGAAGCAGACAATATCAATAAGAAATGCT
TTCCCGGAGATAGCACGAGGTACAAATACCTTTGAAAAGGATCTGTCAAATGATAATGTGTGTATATTCACAAGAGAGTA
CAATGGTGAGAAAGCAGTGCTTATATTTAATCCATCAAAGGATGAAGCAAGTGTGGATGTGTCATCGCTTGGAGTAAATG
ATGCTGTTGCAATGCTTCAGACTACAAAGAAAGCACCTTCATATAAGGATGGAACGGCAAAGCTGCCGGCGTATTCGGTG
CTTGTTTTGAAGTAA

Upstream 100 bases:

>100_bases
AGTGCTAAGTTTGTTGCTACTTTGTGAAAGATGTGAGAATATGTGTAGTGATTTTGTAGATACAAATTTGTTCAGAATTT
AGTTAAGAAAAGGAGTGCGT

Downstream 100 bases:

>100_bases
AAAATATTTGATGAGAATAAAAATTTAAAAGTTTAAAGAAATTTGAAGAAGAAATATGAAAAACCGCCCGACTGGGCGGT
TTTTTCAGCTATATCATTTC

Product: alpha-amylase

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 564; Mature: 564

Protein sequence:

>564_residues
MINNKIGGHNMVGRAVNRLAGRLTAVALTAAMAVSMLAGCAAGGKNTETAAKKEYKPSAMEQMNAKNDPNVIQDNYRTCY
EVFVYSFFDSDGDGIGDLKGLTEKLDYIEGLGCNEIWMMPIMPSPSYHKYDITDYMNIDKQYGTLDDFDALITECHKRNI
NVIIDFVINHTSNEHPWFKAAADYIKSLPDGAEPDSSECPYVDYYNFSKTNTGGYNQLPGTNWYYESQFVDSMPDLNLQS
EAVRGEIDKVTSFWLDRGVDGFRLDAVIYYNNNNQTETIDDLTWLVNNVKSKKADAYMVGEGWTTYREYAKYYKSGIDSM
FNFDFSQQDGYIGKVLNGTANHGASTYGNALVDVENEIKKYTDSYIDAPFYTNHDMGRSAGYYNGDNAEEKTKMAQAMNL
LMPGNAFLYYGEEIGMRGTANDETKRLAMRWSGDSKAKGMCVGPQNAEETEQTYDTLDKQMEDPYSIYNFVKQTISIRNA
FPEIARGTNTFEKDLSNDNVCIFTREYNGEKAVLIFNPSKDEASVDVSSLGVNDAVAMLQTTKKAPSYKDGTAKLPAYSV
LVLK

Sequences:

>Translated_564_residues
MINNKIGGHNMVGRAVNRLAGRLTAVALTAAMAVSMLAGCAAGGKNTETAAKKEYKPSAMEQMNAKNDPNVIQDNYRTCY
EVFVYSFFDSDGDGIGDLKGLTEKLDYIEGLGCNEIWMMPIMPSPSYHKYDITDYMNIDKQYGTLDDFDALITECHKRNI
NVIIDFVINHTSNEHPWFKAAADYIKSLPDGAEPDSSECPYVDYYNFSKTNTGGYNQLPGTNWYYESQFVDSMPDLNLQS
EAVRGEIDKVTSFWLDRGVDGFRLDAVIYYNNNNQTETIDDLTWLVNNVKSKKADAYMVGEGWTTYREYAKYYKSGIDSM
FNFDFSQQDGYIGKVLNGTANHGASTYGNALVDVENEIKKYTDSYIDAPFYTNHDMGRSAGYYNGDNAEEKTKMAQAMNL
LMPGNAFLYYGEEIGMRGTANDETKRLAMRWSGDSKAKGMCVGPQNAEETEQTYDTLDKQMEDPYSIYNFVKQTISIRNA
FPEIARGTNTFEKDLSNDNVCIFTREYNGEKAVLIFNPSKDEASVDVSSLGVNDAVAMLQTTKKAPSYKDGTAKLPAYSV
LVLK
>Mature_564_residues
MINNKIGGHNMVGRAVNRLAGRLTAVALTAAMAVSMLAGCAAGGKNTETAAKKEYKPSAMEQMNAKNDPNVIQDNYRTCY
EVFVYSFFDSDGDGIGDLKGLTEKLDYIEGLGCNEIWMMPIMPSPSYHKYDITDYMNIDKQYGTLDDFDALITECHKRNI
NVIIDFVINHTSNEHPWFKAAADYIKSLPDGAEPDSSECPYVDYYNFSKTNTGGYNQLPGTNWYYESQFVDSMPDLNLQS
EAVRGEIDKVTSFWLDRGVDGFRLDAVIYYNNNNQTETIDDLTWLVNNVKSKKADAYMVGEGWTTYREYAKYYKSGIDSM
FNFDFSQQDGYIGKVLNGTANHGASTYGNALVDVENEIKKYTDSYIDAPFYTNHDMGRSAGYYNGDNAEEKTKMAQAMNL
LMPGNAFLYYGEEIGMRGTANDETKRLAMRWSGDSKAKGMCVGPQNAEETEQTYDTLDKQMEDPYSIYNFVKQTISIRNA
FPEIARGTNTFEKDLSNDNVCIFTREYNGEKAVLIFNPSKDEASVDVSSLGVNDAVAMLQTTKKAPSYKDGTAKLPAYSV
LVLK

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI187423904, Length=493, Percent_Identity=25.5578093306288, Blast_Score=133, Evalue=5e-31,
Organism=Escherichia coli, GI1790687, Length=384, Percent_Identity=30.9895833333333, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1786604, Length=482, Percent_Identity=23.2365145228216, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1789995, Length=425, Percent_Identity=24.9411764705882, Blast_Score=88, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32565753, Length=463, Percent_Identity=22.2462203023758, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI25147709, Length=435, Percent_Identity=25.7471264367816, Blast_Score=99, Evalue=8e-21,
Organism=Saccharomyces cerevisiae, GI6322245, Length=544, Percent_Identity=25.1838235294118, Blast_Score=148, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6321726, Length=540, Percent_Identity=25.1851851851852, Blast_Score=136, Evalue=8e-33,
Organism=Saccharomyces cerevisiae, GI6319776, Length=548, Percent_Identity=24.6350364963504, Blast_Score=136, Evalue=1e-32,
Organism=Saccharomyces cerevisiae, GI6321731, Length=548, Percent_Identity=24.6350364963504, Blast_Score=135, Evalue=1e-32,
Organism=Saccharomyces cerevisiae, GI6324416, Length=542, Percent_Identity=26.0147601476015, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6322241, Length=542, Percent_Identity=26.0147601476015, Blast_Score=134, Evalue=5e-32,
Organism=Saccharomyces cerevisiae, GI6322021, Length=542, Percent_Identity=26.0147601476015, Blast_Score=134, Evalue=5e-32,
Organism=Drosophila melanogaster, GI24583745, Length=538, Percent_Identity=28.2527881040892, Blast_Score=169, Evalue=3e-42,
Organism=Drosophila melanogaster, GI45549022, Length=565, Percent_Identity=26.9026548672566, Blast_Score=159, Evalue=4e-39,
Organism=Drosophila melanogaster, GI24586597, Length=388, Percent_Identity=30.4123711340206, Blast_Score=155, Evalue=8e-38,
Organism=Drosophila melanogaster, GI221330053, Length=210, Percent_Identity=40, Blast_Score=154, Evalue=1e-37,
Organism=Drosophila melanogaster, GI24586599, Length=528, Percent_Identity=26.3257575757576, Blast_Score=153, Evalue=3e-37,
Organism=Drosophila melanogaster, GI24586587, Length=430, Percent_Identity=28.1395348837209, Blast_Score=146, Evalue=4e-35,
Organism=Drosophila melanogaster, GI24586591, Length=200, Percent_Identity=35, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24583747, Length=562, Percent_Identity=27.0462633451957, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24583749, Length=562, Percent_Identity=27.0462633451957, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI24586593, Length=396, Percent_Identity=28.030303030303, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24586589, Length=442, Percent_Identity=26.0180995475113, Blast_Score=132, Evalue=6e-31,
Organism=Drosophila melanogaster, GI281360393, Length=345, Percent_Identity=25.7971014492754, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 63187; Mature: 63187

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINNKIGGHNMVGRAVNRLAGRLTAVALTAAMAVSMLAGCAAGGKNTETAAKKEYKPSAM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHH
EQMNAKNDPNVIQDNYRTCYEVFVYSFFDSDGDGIGDLKGLTEKLDYIEGLGCNEIWMMP
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
IMPSPSYHKYDITDYMNIDKQYGTLDDFDALITECHKRNINVIIDFVINHTSNEHPWFKA
CCCCCCCCEEECHHHHCCCHHCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHH
AADYIKSLPDGAEPDSSECPYVDYYNFSKTNTGGYNQLPGTNWYYESQFVDSMPDLNLQS
HHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCHHHHCCCCCCCCH
EAVRGEIDKVTSFWLDRGVDGFRLDAVIYYNNNNQTETIDDLTWLVNNVKSKKADAYMVG
HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEC
EGWTTYREYAKYYKSGIDSMFNFDFSQQDGYIGKVLNGTANHGASTYGNALVDVENEIKK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHCCCCCCCCCHHHCCEEEEHHHHHHH
YTDSYIDAPFYTNHDMGRSAGYYNGDNAEEKTKMAQAMNLLMPGNAFLYYGEEIGMRGTA
HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCC
NDETKRLAMRWSGDSKAKGMCVGPQNAEETEQTYDTLDKQMEDPYSIYNFVKQTISIRNA
CCHHHEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FPEIARGTNTFEKDLSNDNVCIFTREYNGEKAVLIFNPSKDEASVDVSSLGVNDAVAMLQ
HHHHHCCCCHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHH
TTKKAPSYKDGTAKLPAYSVLVLK
HHHCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MINNKIGGHNMVGRAVNRLAGRLTAVALTAAMAVSMLAGCAAGGKNTETAAKKEYKPSAM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHH
EQMNAKNDPNVIQDNYRTCYEVFVYSFFDSDGDGIGDLKGLTEKLDYIEGLGCNEIWMMP
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
IMPSPSYHKYDITDYMNIDKQYGTLDDFDALITECHKRNINVIIDFVINHTSNEHPWFKA
CCCCCCCCEEECHHHHCCCHHCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHH
AADYIKSLPDGAEPDSSECPYVDYYNFSKTNTGGYNQLPGTNWYYESQFVDSMPDLNLQS
HHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCHHHHCCCCCCCCH
EAVRGEIDKVTSFWLDRGVDGFRLDAVIYYNNNNQTETIDDLTWLVNNVKSKKADAYMVG
HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEC
EGWTTYREYAKYYKSGIDSMFNFDFSQQDGYIGKVLNGTANHGASTYGNALVDVENEIKK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHCCCCCCCCCHHHCCEEEEHHHHHHH
YTDSYIDAPFYTNHDMGRSAGYYNGDNAEEKTKMAQAMNLLMPGNAFLYYGEEIGMRGTA
HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCC
NDETKRLAMRWSGDSKAKGMCVGPQNAEETEQTYDTLDKQMEDPYSIYNFVKQTISIRNA
CCHHHEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FPEIARGTNTFEKDLSNDNVCIFTREYNGEKAVLIFNPSKDEASVDVSSLGVNDAVAMLQ
HHHHHCCCCHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHH
TTKKAPSYKDGTAKLPAYSVLVLK
HHHCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2455281 [H]