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The map label for this gene is yabO [H]

Identifier: 238922940

GI number: 238922940

Start: 488750

End: 488989

Strand: Direct

Name: yabO [H]

Synonym: EUBREC_0528

Alternate gene names: 238922940

Gene position: 488750-488989 (Clockwise)

Preceding gene: 238922939

Following gene: 238922941

Centisome position: 14.17

GC content: 40.83

Gene sequence:

>240_bases
ATGAGATTAGACAAATTTTTGAAGGTATCGCGTCTGATAAAGAGACGTACAGTGGCAAATGAGGCATGTGACGCAGGCCG
TGTCACAGTAAACGGCAGACCGGCAAAGGCATCTGTAAATGTCAAGGTCGGAGACATAATAGAGATAGCATTTGGACAAA
AGACAGTCAAGGTTAAGGTGTTAAATCTCCTTGACACAACAAAGAAGGAAGAAGCAAAAGATCTTTTTGAGTATATATAG

Upstream 100 bases:

>100_bases
GGGTGAAGCCTTTAAGGCTCCGCCCATTTTTGGCTATATCCACTGAAATCAGGGTAATGGTTATGAATTGATTTATTATA
GGTAAGACACAGAGGTAACA

Downstream 100 bases:

>100_bases
GTTATATTTTCATGAATCCCGGCATATATTTACATATGCGATTCCACAGATGGCATGTATATGTGCGGCTGTCTATGGAG
CATATTAAAAATTATGTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MRLDKFLKVSRLIKRRTVANEACDAGRVTVNGRPAKASVNVKVGDIIEIAFGQKTVKVKVLNLLDTTKKEEAKDLFEYI

Sequences:

>Translated_79_residues
MRLDKFLKVSRLIKRRTVANEACDAGRVTVNGRPAKASVNVKVGDIIEIAFGQKTVKVKVLNLLDTTKKEEAKDLFEYI
>Mature_79_residues
MRLDKFLKVSRLIKRRTVANEACDAGRVTVNGRPAKASVNVKVGDIIEIAFGQKTVKVKVLNLLDTTKKEEAKDLFEYI

Specific function: Unknown

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 8862; Mature: 8862

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKFLKVSRLIKRRTVANEACDAGRVTVNGRPAKASVNVKVGDIIEIAFGQKTVKVKV
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCEEEEECCCCEEEEEE
LNLLDTTKKEEAKDLFEYI
EHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRLDKFLKVSRLIKRRTVANEACDAGRVTVNGRPAKASVNVKVGDIIEIAFGQKTVKVKV
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCEEEEECCCCEEEEEE
LNLLDTTKKEEAKDLFEYI
EHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]