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The map label for this gene is ydaM [H]

Identifier: 238922928

GI number: 238922928

Start: 477051

End: 478481

Strand: Direct

Name: ydaM [H]

Synonym: EUBREC_0516

Alternate gene names: 238922928

Gene position: 477051-478481 (Clockwise)

Preceding gene: 238922927

Following gene: 238922931

Centisome position: 13.83

GC content: 41.44

Gene sequence:

>1431_bases
ATGAAAAATAAGCGAAGATTTGCAATGGTCTCAGTTTCAGTAATCGTAGTAGCATTGATTCTCGAGGCGGGAATTTTGAA
ATATGTAAATGATGCAAATGCATATAAGCTATCAAAGGTGCTTCTGGATCGTGTTTTCACTGTGCTCGATAAAAATGACC
AGAGTGAGGAGGAGCTTATAGAATCGTTAAAGGACGATTATATAGTCAGGGCAAAAGCAGTGTCATATATCGTAGATGCA
AAGCCACAGGTAGAAAATGATGTGGAGGAATTGCAAAAGATAGCAAAGCTGATGTCGGTAGATGAGATACATCTGTTTGA
TGAAACAGGTTGTATAACCAGCGGCAGCGTGCCAAAATACTTTGGCTACAGCTTTGATTCGGGGACTCAGATGTCATATT
TTAAACCAATGCTCACCGATAAGAGCCTTACGATGTGTCAGGATGTCACACCGAATACATCAGAGGGAAAGGCAATGATG
TATGCCATTACCTGGAATGAGGCTGGCACAATGATGGTACAGGTGGGTTTGAAGCCGCAAAGGCTCTTAGATGAATTGAA
GCAGAATGAAATATCTACAGTGGTTTCTGACATGCCTGTGTACAAGGGCATGGAACTTTATGTGGCAGATGCAGATACAG
AACTGGTTAAGGGGGCCACAGATTGTGACAAAATAGGAAAAACCTTCCACGATTTAGGCCTTCCAACAGATATTAAGGAA
AGCGATAAGCCAACAGTAAGGCAGATTAGCGTAAATGATTCAGGCTGCAGATGTGTAATCAGGAGAGGTGACAAATATAT
AGTGGCTGTCACCATTGACAAATCCTTTTATATGACGAACAGCGTAGTAGCACTGCTTGTAGTTGGCATATATCTTATAC
TCGCATCGTGCTGTATTATGTATATGTTTTCGAAGATTATGAAGGAAAAATATGAGAAAGAAAAGCTGTTGTATATATCG
AATACTGATGCACTTACAGGGTGCCTGAACAGACATGCCTATGAGACAGATATCAATAAGCTTGATTTGAAAAAAGAGTG
GATATATATATCACTTGATTTAAACAGCTTAAAGCATGTAAACGATACATATGGACATGCTGCGGGTGATGAGATGATTT
GCGCAGCCGCAACATGCATGATGGCAAGCTTTGGTGAGTTTGGCAGGGTGTACAGAATAGGCGGAGATGAGTTTGCTGTG
ATAATTACACAAAAGCCGGATGAGCTTGATGCTATGACAAAGCATTTCGACAGCAGTGTAGCCGAATGGAGAGGAAAAAT
CGTCGATTCCATGACCATCTCATACGGATGTGTAAGAAGTCTGGAGGAAGACTGGGAGTTTGTATACGATATTGCGAAGG
AAGCAGACAGGAGAATGTATGCAAGCAAGGCGCGCTATTACAGTGACAGTGACATAGACAGGAGAAAGTAA

Upstream 100 bases:

>100_bases
TACGGGGAGTATGTGCGCTGCCACGGCAGGCGGTGGCATGCGGTCCGTAATTTTATAGAAAAATATAGCGTAATCAGCAT
ATATTTGGTATAATTTGGAT

Downstream 100 bases:

>100_bases
ATTAAAATAAAGATTCCACCAATACGGATATGGTATTGATGGAATCTTTTAAGTGGGAAAATAAATAATTAGTGGAACAG
CTCTACAATAAATACCGCCA

Product: response regulator PleD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MKNKRRFAMVSVSVIVVALILEAGILKYVNDANAYKLSKVLLDRVFTVLDKNDQSEEELIESLKDDYIVRAKAVSYIVDA
KPQVENDVEELQKIAKLMSVDEIHLFDETGCITSGSVPKYFGYSFDSGTQMSYFKPMLTDKSLTMCQDVTPNTSEGKAMM
YAITWNEAGTMMVQVGLKPQRLLDELKQNEISTVVSDMPVYKGMELYVADADTELVKGATDCDKIGKTFHDLGLPTDIKE
SDKPTVRQISVNDSGCRCVIRRGDKYIVAVTIDKSFYMTNSVVALLVVGIYLILASCCIMYMFSKIMKEKYEKEKLLYIS
NTDALTGCLNRHAYETDINKLDLKKEWIYISLDLNSLKHVNDTYGHAAGDEMICAAATCMMASFGEFGRVYRIGGDEFAV
IITQKPDELDAMTKHFDSSVAEWRGKIVDSMTISYGCVRSLEEDWEFVYDIAKEADRRMYASKARYYSDSDIDRRK

Sequences:

>Translated_476_residues
MKNKRRFAMVSVSVIVVALILEAGILKYVNDANAYKLSKVLLDRVFTVLDKNDQSEEELIESLKDDYIVRAKAVSYIVDA
KPQVENDVEELQKIAKLMSVDEIHLFDETGCITSGSVPKYFGYSFDSGTQMSYFKPMLTDKSLTMCQDVTPNTSEGKAMM
YAITWNEAGTMMVQVGLKPQRLLDELKQNEISTVVSDMPVYKGMELYVADADTELVKGATDCDKIGKTFHDLGLPTDIKE
SDKPTVRQISVNDSGCRCVIRRGDKYIVAVTIDKSFYMTNSVVALLVVGIYLILASCCIMYMFSKIMKEKYEKEKLLYIS
NTDALTGCLNRHAYETDINKLDLKKEWIYISLDLNSLKHVNDTYGHAAGDEMICAAATCMMASFGEFGRVYRIGGDEFAV
IITQKPDELDAMTKHFDSSVAEWRGKIVDSMTISYGCVRSLEEDWEFVYDIAKEADRRMYASKARYYSDSDIDRRK
>Mature_476_residues
MKNKRRFAMVSVSVIVVALILEAGILKYVNDANAYKLSKVLLDRVFTVLDKNDQSEEELIESLKDDYIVRAKAVSYIVDA
KPQVENDVEELQKIAKLMSVDEIHLFDETGCITSGSVPKYFGYSFDSGTQMSYFKPMLTDKSLTMCQDVTPNTSEGKAMM
YAITWNEAGTMMVQVGLKPQRLLDELKQNEISTVVSDMPVYKGMELYVADADTELVKGATDCDKIGKTFHDLGLPTDIKE
SDKPTVRQISVNDSGCRCVIRRGDKYIVAVTIDKSFYMTNSVVALLVVGIYLILASCCIMYMFSKIMKEKYEKEKLLYIS
NTDALTGCLNRHAYETDINKLDLKKEWIYISLDLNSLKHVNDTYGHAAGDEMICAAATCMMASFGEFGRVYRIGGDEFAV
IITQKPDELDAMTKHFDSSVAEWRGKIVDSMTISYGCVRSLEEDWEFVYDIAKEADRRMYASKARYYSDSDIDRRK

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=27.906976744186, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=31.547619047619, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787541, Length=112, Percent_Identity=33.9285714285714, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 53822; Mature: 53822

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKRRFAMVSVSVIVVALILEAGILKYVNDANAYKLSKVLLDRVFTVLDKNDQSEEELI
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
ESLKDDYIVRAKAVSYIVDAKPQVENDVEELQKIAKLMSVDEIHLFDETGCITSGSVPKY
HHHHHHHEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHH
FGYSFDSGTQMSYFKPMLTDKSLTMCQDVTPNTSEGKAMMYAITWNEAGTMMVQVGLKPQ
CCCCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEECCCHH
RLLDELKQNEISTVVSDMPVYKGMELYVADADTELVKGATDCDKIGKTFHDLGLPTDIKE
HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHCCCCCCCCC
SDKPTVRQISVNDSGCRCVIRRGDKYIVAVTIDKSFYMTNSVVALLVVGIYLILASCCIM
CCCCCEEEEEECCCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
YMFSKIMKEKYEKEKLLYISNTDALTGCLNRHAYETDINKLDLKKEWIYISLDLNSLKHV
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHCCCCCEECEEEEEEEEEEHHHHHHC
NDTYGHAAGDEMICAAATCMMASFGEFGRVYRIGGDEFAVIITQKPDELDAMTKHFDSSV
CHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHH
AEWRGKIVDSMTISYGCVRSLEEDWEFVYDIAKEADRRMYASKARYYSDSDIDRRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKNKRRFAMVSVSVIVVALILEAGILKYVNDANAYKLSKVLLDRVFTVLDKNDQSEEELI
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
ESLKDDYIVRAKAVSYIVDAKPQVENDVEELQKIAKLMSVDEIHLFDETGCITSGSVPKY
HHHHHHHEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHH
FGYSFDSGTQMSYFKPMLTDKSLTMCQDVTPNTSEGKAMMYAITWNEAGTMMVQVGLKPQ
CCCCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEECCCHH
RLLDELKQNEISTVVSDMPVYKGMELYVADADTELVKGATDCDKIGKTFHDLGLPTDIKE
HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHCCCCCCCCC
SDKPTVRQISVNDSGCRCVIRRGDKYIVAVTIDKSFYMTNSVVALLVVGIYLILASCCIM
CCCCCEEEEEECCCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
YMFSKIMKEKYEKEKLLYISNTDALTGCLNRHAYETDINKLDLKKEWIYISLDLNSLKHV
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHCCCCCEECEEEEEEEEEEHHHHHHC
NDTYGHAAGDEMICAAATCMMASFGEFGRVYRIGGDEFAVIITQKPDELDAMTKHFDSSV
CHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHH
AEWRGKIVDSMTISYGCVRSLEEDWEFVYDIAKEADRRMYASKARYYSDSDIDRRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]