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The map label for this gene is yjcC [C]

Identifier: 238922923

GI number: 238922923

Start: 473630

End: 475306

Strand: Direct

Name: yjcC [C]

Synonym: EUBREC_0511

Alternate gene names: 238922923

Gene position: 473630-475306 (Clockwise)

Preceding gene: 238922922

Following gene: 238922924

Centisome position: 13.73

GC content: 39.42

Gene sequence:

>1677_bases
ATGAGGGCTTTTGATGCATATAAAATACTTGACGAGCAGGAGGCAGGAAGTCTGATAGACTTAATTGCACCTTGTATGGA
TGATTATCTGTATATTATAGATTTAAAGAATGATACACTGAGGATATCACAGTCAGCGGTAGAGCGTTTTATGCTTCCTG
ATAAATTTATGAATGATGCAACAAAGCATCTTCGTACATTGGTTTATGAGAAAGACCGTAAGCTGCTCGAAAATCACAAG
CGTAAAATATATGATGGAAAAGAAAAAAGGTACAACGTGCTATGTCGTTTGATGAACAGCAAAAATCTCCCGGTATGGAT
TAACTGCCGTGGGGAGGTCATCAATGACGAGGCGGGGAAACCACGATATATTATAGGCTGCATGAACGAGACAGGAACAA
GGCAGCGAGCTGACAATATCAGTGGGCTGTTAGGTGAAAAGGAGATGGCATCATATCTCTATTCACAGCCTAAAGAGAAG
CTGTCAGGTTATTTCATACAGATTGGAATTGACGATTTTGGGATAATCAATAATGTTCAGGGTCAGATATATGGCAACTA
CATACTTAAAAGAGTGGCCGAATGCATAGCAGAATGTCTCTCAAGCGGTCAGAGAATATATCATCTTGTTACAGATAAGT
ATATGCTTGTGGATATGCTTAGCAAATCGCAGGATGATGTGGTGCAGTTGTTCAAAAGGATAGGTGAAAAAATTGATGAG
TTTATAGTTGATGAAAACTATAAATCAATCTTTTCGATTTCTGCCGGAGTGACAGATATATCAACACTGGCAGAGGACGC
AATAGAGTGCAGGAAAAAGTCGGATTTTTCTTTAAAATGCGCAAAAAAAAGAGGCGGAGGAAGCCTTTATTTCTTCGAGG
AAGAGGATTATAAAGTGTCATTGCGCAAAAATACCATCCTGAGTGCGCTTCGTAGCGCAACTGTAAATGATTTTGAAGGC
TTTGAGGTATATTATCAGCCTATCTTAGATAGTGCTGATCGAATAATCGGTGCAGAGGCACTTTTACGGTTTTTCATGCA
TTCGGATGAGGGCGATGAAATGATTTCCCCGGTTGAGTTTATTCCTTTACTGGAGAAGAGCAGGCTCATCATTCCGGTTG
GAGAGTTTGTATTGAACGAAGCAGCAAAAATGTGCCGTGAAATGCAGCAGTATATTGCGGATTTCAGGGTAAATATCAAT
GTATCATATATACAGATTATGCGTGGAAGTATGGCAAATAAAATCCTTACTGCTATCCGGGCAAACAATCTGAGACCTGA
ATCCATCTGTATCGAAATGACAGAGAGTGGATTCATGGATATGACGCCATGTTTTTGCAGCTTCAGGAAAAAGCTTGATG
AGAATAATATCCAGTTCATAATAGATGATTTTGGAACAGGCTATTCAAATCTTCGCTATATCAGTGAGATGAACCCGGAC
TATGTAAAGATAGATAAGGATTTTACGGCAAGGGCGATGAGCAGTGAGAAGGACTATGAGCTGTTCAGAAAGATTATAGA
GATGGTTCACAGTATAAATATAAAAATCTGCATTGAGGGAATTGAGAAGGAAGAGTGGGCTTGCGCAATGAAAGAAATCC
ATGTAGATTATATGCAGGGATATCTGTATGGCAGACCATGCGAAAAAGGCGTTTTTTTAAACAACTATGGGATATAA

Upstream 100 bases:

>100_bases
GAGCCAGCAGATGAGCAGTGAATCAGAAAATCTGAGTGAAATGATAGCAAAATTCAAAATCTCAGACATTGAAGAGTAAT
ATAATAGAAGGTGAAATTTA

Downstream 100 bases:

>100_bases
GGAATATTTTCCGGGAGTTACAGACAAAAAGAATGCCAATGAAATATTTGAAAGAATATTTAAACGTACAGAAAAACTAA
ACATCAAGGTATTGGGCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MRAFDAYKILDEQEAGSLIDLIAPCMDDYLYIIDLKNDTLRISQSAVERFMLPDKFMNDATKHLRTLVYEKDRKLLENHK
RKIYDGKEKRYNVLCRLMNSKNLPVWINCRGEVINDEAGKPRYIIGCMNETGTRQRADNISGLLGEKEMASYLYSQPKEK
LSGYFIQIGIDDFGIINNVQGQIYGNYILKRVAECIAECLSSGQRIYHLVTDKYMLVDMLSKSQDDVVQLFKRIGEKIDE
FIVDENYKSIFSISAGVTDISTLAEDAIECRKKSDFSLKCAKKRGGGSLYFFEEEDYKVSLRKNTILSALRSATVNDFEG
FEVYYQPILDSADRIIGAEALLRFFMHSDEGDEMISPVEFIPLLEKSRLIIPVGEFVLNEAAKMCREMQQYIADFRVNIN
VSYIQIMRGSMANKILTAIRANNLRPESICIEMTESGFMDMTPCFCSFRKKLDENNIQFIIDDFGTGYSNLRYISEMNPD
YVKIDKDFTARAMSSEKDYELFRKIIEMVHSINIKICIEGIEKEEWACAMKEIHVDYMQGYLYGRPCEKGVFLNNYGI

Sequences:

>Translated_558_residues
MRAFDAYKILDEQEAGSLIDLIAPCMDDYLYIIDLKNDTLRISQSAVERFMLPDKFMNDATKHLRTLVYEKDRKLLENHK
RKIYDGKEKRYNVLCRLMNSKNLPVWINCRGEVINDEAGKPRYIIGCMNETGTRQRADNISGLLGEKEMASYLYSQPKEK
LSGYFIQIGIDDFGIINNVQGQIYGNYILKRVAECIAECLSSGQRIYHLVTDKYMLVDMLSKSQDDVVQLFKRIGEKIDE
FIVDENYKSIFSISAGVTDISTLAEDAIECRKKSDFSLKCAKKRGGGSLYFFEEEDYKVSLRKNTILSALRSATVNDFEG
FEVYYQPILDSADRIIGAEALLRFFMHSDEGDEMISPVEFIPLLEKSRLIIPVGEFVLNEAAKMCREMQQYIADFRVNIN
VSYIQIMRGSMANKILTAIRANNLRPESICIEMTESGFMDMTPCFCSFRKKLDENNIQFIIDDFGTGYSNLRYISEMNPD
YVKIDKDFTARAMSSEKDYELFRKIIEMVHSINIKICIEGIEKEEWACAMKEIHVDYMQGYLYGRPCEKGVFLNNYGI
>Mature_558_residues
MRAFDAYKILDEQEAGSLIDLIAPCMDDYLYIIDLKNDTLRISQSAVERFMLPDKFMNDATKHLRTLVYEKDRKLLENHK
RKIYDGKEKRYNVLCRLMNSKNLPVWINCRGEVINDEAGKPRYIIGCMNETGTRQRADNISGLLGEKEMASYLYSQPKEK
LSGYFIQIGIDDFGIINNVQGQIYGNYILKRVAECIAECLSSGQRIYHLVTDKYMLVDMLSKSQDDVVQLFKRIGEKIDE
FIVDENYKSIFSISAGVTDISTLAEDAIECRKKSDFSLKCAKKRGGGSLYFFEEEDYKVSLRKNTILSALRSATVNDFEG
FEVYYQPILDSADRIIGAEALLRFFMHSDEGDEMISPVEFIPLLEKSRLIIPVGEFVLNEAAKMCREMQQYIADFRVNIN
VSYIQIMRGSMANKILTAIRANNLRPESICIEMTESGFMDMTPCFCSFRKKLDENNIQFIIDDFGTGYSNLRYISEMNPD
YVKIDKDFTARAMSSEKDYELFRKIIEMVHSINIKICIEGIEKEEWACAMKEIHVDYMQGYLYGRPCEKGVFLNNYGI

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=33.8912133891213, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1787541, Length=499, Percent_Identity=22.2444889779559, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081921, Length=418, Percent_Identity=23.6842105263158, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=29.4117647058824, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1787055, Length=226, Percent_Identity=32.7433628318584, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87081980, Length=228, Percent_Identity=32.0175438596491, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87081845, Length=226, Percent_Identity=27.4336283185841, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI226510982, Length=281, Percent_Identity=25.6227758007117, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=29.8319327731092, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788502, Length=236, Percent_Identity=29.2372881355932, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788849, Length=208, Percent_Identity=27.8846153846154, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87082096, Length=196, Percent_Identity=22.9591836734694, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787410, Length=138, Percent_Identity=28.9855072463768, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 64385; Mature: 64385

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAFDAYKILDEQEAGSLIDLIAPCMDDYLYIIDLKNDTLRISQSAVERFMLPDKFMNDA
CCCCHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEECCCCEEHHHHHHHHHCCCHHHHHHH
TKHLRTLVYEKDRKLLENHKRKIYDGKEKRYNVLCRLMNSKNLPVWINCRGEVINDEAGK
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCCC
PRYIIGCMNETGTRQRADNISGLLGEKEMASYLYSQPKEKLSGYFIQIGIDDFGIINNVQ
CEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCCCC
GQIYGNYILKRVAECIAECLSSGQRIYHLVTDKYMLVDMLSKSQDDVVQLFKRIGEKIDE
CHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
FIVDENYKSIFSISAGVTDISTLAEDAIECRKKSDFSLKCAKKRGGGSLYFFEEEDYKVS
HHHCCCCHHHEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCCCEEE
LRKNTILSALRSATVNDFEGFEVYYQPILDSADRIIGAEALLRFFMHSDEGDEMISPVEF
EHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
IPLLEKSRLIIPVGEFVLNEAAKMCREMQQYIADFRVNINVSYIQIMRGSMANKILTAIR
HHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHH
ANNLRPESICIEMTESGFMDMTPCFCSFRKKLDENNIQFIIDDFGTGYSNLRYISEMNPD
HCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCC
YVKIDKDFTARAMSSEKDYELFRKIIEMVHSINIKICIEGIEKEEWACAMKEIHVDYMQG
EEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
YLYGRPCEKGVFLNNYGI
HHCCCCCCCCEEECCCCC
>Mature Secondary Structure
MRAFDAYKILDEQEAGSLIDLIAPCMDDYLYIIDLKNDTLRISQSAVERFMLPDKFMNDA
CCCCHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEECCCCEEHHHHHHHHHCCCHHHHHHH
TKHLRTLVYEKDRKLLENHKRKIYDGKEKRYNVLCRLMNSKNLPVWINCRGEVINDEAGK
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCCC
PRYIIGCMNETGTRQRADNISGLLGEKEMASYLYSQPKEKLSGYFIQIGIDDFGIINNVQ
CEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCCCC
GQIYGNYILKRVAECIAECLSSGQRIYHLVTDKYMLVDMLSKSQDDVVQLFKRIGEKIDE
CHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
FIVDENYKSIFSISAGVTDISTLAEDAIECRKKSDFSLKCAKKRGGGSLYFFEEEDYKVS
HHHCCCCHHHEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCCCEEE
LRKNTILSALRSATVNDFEGFEVYYQPILDSADRIIGAEALLRFFMHSDEGDEMISPVEF
EHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
IPLLEKSRLIIPVGEFVLNEAAKMCREMQQYIADFRVNINVSYIQIMRGSMANKILTAIR
HHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHH
ANNLRPESICIEMTESGFMDMTPCFCSFRKKLDENNIQFIIDDFGTGYSNLRYISEMNPD
HCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCC
YVKIDKDFTARAMSSEKDYELFRKIIEMVHSINIKICIEGIEKEEWACAMKEIHVDYMQG
EEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
YLYGRPCEKGVFLNNYGI
HHCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]