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The map label for this gene is amyD [H]

Identifier: 238922899

GI number: 238922899

Start: 446104

End: 446979

Strand: Direct

Name: amyD [H]

Synonym: EUBREC_0487

Alternate gene names: 238922899

Gene position: 446104-446979 (Clockwise)

Preceding gene: 238922898

Following gene: 238922900

Centisome position: 12.93

GC content: 41.78

Gene sequence:

>876_bases
ATGAAAAAGAAAATGTCAAATAGGGACAAGACATTCTGGGCAGTTGTGATACCTGTTGTGGTTTTATTTTTCGCATTTAA
CACGCTGCCGATGATAAAGGGTGTGATTTACAGCTTTACAAACTACAAGGGCTATGGCTCATATGATTATGTCGGACTTA
GAAACTATACAGACCTGTTTACCGACGCCAGAGTCGGAAAGAGCTATCTGTTTACTTTTAAATATGCGATTGCAGGAACC
GTACTTGTAAATGTATTAAGCCTTGTAATGGCAGTTGCGTTAAACAGCAATATCCGCGGCAAGAGTGCATTAAGAGGTGT
TTATTTCGTACCGAATATCCTTGGCGGACTGGTTATTGGTTACATTTTCAGCTTTATTTTTACATATATTCTGCCGGTAG
TAGGAAATACCTTCAACATCGGTTTCTTACAAAACAGTATTCTGGCGAGTGAAAAATATGCATGGATTGGCGTGCTGATT
GTCGGGGTATGGCAGGCGGTTGCCATGAATACAATCATTTATATATCCGGACTGCAGACAGTGCCTGAGGATGTTTACGA
AGCCAGCATGCTCGACGGAGCAGGCAAATGGAAACAGTTCTGGAAGGTTACGTTTCCACTCGTTATGCCGTTTGTTACAA
TCAATCTGGTGCTCAGCACAAAGAACTTCCTCATGGTATTTGACCAGATTATGTCATTGACAAAGGGCGGCCCGGCACAG
AGCACTGAGTCAATCTCATACCTGATTTACAGAAATGGTATGGATGGAGGACAGTTTGGATTCCAGAGTGCAAACGCAGT
AATTTTCTTTGTTGTAATTGTGGCTATTTCACTATTCCAGATGGGCGTTATGAATAAGAAGGAGGAGCAGTTATAA

Upstream 100 bases:

>100_bases
AAGAGAAGTTCTTAAAGAAATTTGATTCAGACTGGGAGCGTTACAACAGAGATCTGATTCGTGAAGTACAGGATTACCAG
AAGGAACAGGAGGATGCAAA

Downstream 100 bases:

>100_bases
TGAAAAAACAAAAATCAAACTGGGTACTTACCATCGTTTTAATATTGGGAACCTTAACCGTATTTTTCCCACTGTATATG
GCTGTTATCATTGCCTTCAA

Product: ABC-type sugar transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKKKMSNRDKTFWAVVIPVVVLFFAFNTLPMIKGVIYSFTNYKGYGSYDYVGLRNYTDLFTDARVGKSYLFTFKYAIAGT
VLVNVLSLVMAVALNSNIRGKSALRGVYFVPNILGGLVIGYIFSFIFTYILPVVGNTFNIGFLQNSILASEKYAWIGVLI
VGVWQAVAMNTIIYISGLQTVPEDVYEASMLDGAGKWKQFWKVTFPLVMPFVTINLVLSTKNFLMVFDQIMSLTKGGPAQ
STESISYLIYRNGMDGGQFGFQSANAVIFFVVIVAISLFQMGVMNKKEEQL

Sequences:

>Translated_291_residues
MKKKMSNRDKTFWAVVIPVVVLFFAFNTLPMIKGVIYSFTNYKGYGSYDYVGLRNYTDLFTDARVGKSYLFTFKYAIAGT
VLVNVLSLVMAVALNSNIRGKSALRGVYFVPNILGGLVIGYIFSFIFTYILPVVGNTFNIGFLQNSILASEKYAWIGVLI
VGVWQAVAMNTIIYISGLQTVPEDVYEASMLDGAGKWKQFWKVTFPLVMPFVTINLVLSTKNFLMVFDQIMSLTKGGPAQ
STESISYLIYRNGMDGGQFGFQSANAVIFFVVIVAISLFQMGVMNKKEEQL
>Mature_291_residues
MKKKMSNRDKTFWAVVIPVVVLFFAFNTLPMIKGVIYSFTNYKGYGSYDYVGLRNYTDLFTDARVGKSYLFTFKYAIAGT
VLVNVLSLVMAVALNSNIRGKSALRGVYFVPNILGGLVIGYIFSFIFTYILPVVGNTFNIGFLQNSILASEKYAWIGVLI
VGVWQAVAMNTIIYISGLQTVPEDVYEASMLDGAGKWKQFWKVTFPLVMPFVTINLVLSTKNFLMVFDQIMSLTKGGPAQ
STESISYLIYRNGMDGGQFGFQSANAVIFFVVIVAISLFQMGVMNKKEEQL

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=285, Percent_Identity=27.0175438596491, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790465, Length=261, Percent_Identity=25.2873563218391, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787570, Length=269, Percent_Identity=22.3048327137546, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32483; Mature: 32483

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKMSNRDKTFWAVVIPVVVLFFAFNTLPMIKGVIYSFTNYKGYGSYDYVGLRNYTDLF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHH
TDARVGKSYLFTFKYAIAGTVLVNVLSLVMAVALNSNIRGKSALRGVYFVPNILGGLVIG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
YIFSFIFTYILPVVGNTFNIGFLQNSILASEKYAWIGVLIVGVWQAVAMNTIIYISGLQT
HHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCHH
VPEDVYEASMLDGAGKWKQFWKVTFPLVMPFVTINLVLSTKNFLMVFDQIMSLTKGGPAQ
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
STESISYLIYRNGMDGGQFGFQSANAVIFFVVIVAISLFQMGVMNKKEEQL
CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MKKKMSNRDKTFWAVVIPVVVLFFAFNTLPMIKGVIYSFTNYKGYGSYDYVGLRNYTDLF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHH
TDARVGKSYLFTFKYAIAGTVLVNVLSLVMAVALNSNIRGKSALRGVYFVPNILGGLVIG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
YIFSFIFTYILPVVGNTFNIGFLQNSILASEKYAWIGVLIVGVWQAVAMNTIIYISGLQT
HHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCHH
VPEDVYEASMLDGAGKWKQFWKVTFPLVMPFVTINLVLSTKNFLMVFDQIMSLTKGGPAQ
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
STESISYLIYRNGMDGGQFGFQSANAVIFFVVIVAISLFQMGVMNKKEEQL
CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]