Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 238922849

GI number: 238922849

Start: 392973

End: 394292

Strand: Direct

Name: secY [H]

Synonym: EUBREC_0437

Alternate gene names: 238922849

Gene position: 392973-394292 (Clockwise)

Preceding gene: 238922848

Following gene: 238922850

Centisome position: 11.39

GC content: 38.41

Gene sequence:

>1320_bases
ATGCTTAAAACACTCCGTAATGCGTTTAAAATAAAGGATGTCCGTAATAGAATCCTTTTTACATTCATGATGCTTATTGT
CATCAGAATCGGAAGCGAGCTTCCGATTCCTGGTGTCAAGGGCTCCGTATTTCAGAGTTGGTTAAACAGTAAATCAGCAG
ATGGTTTAGGCTTTGTTGATGCTATAACAGGTGGATCATTCTCACAGATGTCAGTATTTGCGCTGAATATTACACCATAC
ATTACATCTTCAATCATTATGCAGTTGCTTACAATTGCTATACCTAAGCTTGAAGAGATGCAACGCGATGGCGAGGATGG
CAGAAAGAAAATTGTTGAGATAACACGTTATCTTACAATAGCATTAGGCCTTCTTGAGTCAGTCATGATGGTAATTGGTT
TTTACAGACAAAATTACCTTACAGAAAAGACACCATTGACTGTTATTATGGTCGTTACTTCACTTACAGCTGGTTCAGCT
GTACTTATGTGGATTGGAGAGCGTATTACAGAAAAGGGTGTTGGAAACGGAATATCAATAGTATTGACAATCAATATTAT
TTCACGTATTCCAGAGGATTTAAGTACACTTTGGTCACAGTTCATTGCTTCAGCAGCGAACATACCAAAGGCGATTGTTG
CAGGTCTTATCATAGTAGCAATAATTGCTGCAATGGTAGTATTTGTAGTATTGCTTCAGGATGCACAGCGCAAGATTCCT
GTACAGTACTCAAGCAAAATAAGAGGCAACAAGCAGATGGGCGGTCAGCAGACATGCATTCCACTAAAGGTAAATACCAG
TGGAGTTATCCCGGTGATCTTTGCACAGTCTCTTATGCAGACACCTGTTATCATTGCCAGCTTCCTTGGAAAAGGCAATG
GAAATGGAATAGGCTCTAAGATATTAAAAGGATTATCACAGTCTAACTGGTGTGATCCAAAGGAGCCGGTATATTCAATC
GGACTTATTGTTTACATTGTGTTGATTATAGCATTTGCTTATTTCTACACAAACATTACATTCAATCCGCTTGAGATTGC
AAACAATATGAAGCGTTCAGGTGGCTTTATACCCGGTATCAGACCTGGAAAGCCAACCAGCGATTACTTAAATCAGATAT
TAAACTACATTGTATTTATTGGAGCTATTGGACTTGCGTTTATCGCATTTGTTCCGATATTCTTCAATGGAGTATTCAAC
GCAGATGTATCCTTTGGTGGAACTTCAATCATCATCATTGTCGGAGTTGTTATTGAGACATTGAAGCAAATTGAATCACA
GATGAGAGTTCGATACTATAAAGGATTTTTAGATGATTAA

Upstream 100 bases:

>100_bases
ATGGAGAACTTACTAAGAAGCTTACAGTTCAGGCTAACGCTTTCAGTGCTAGTGCAAAAGAGAAAATCGAAGCTCTTGGT
GGAAAAGCAGAGGTGATCTA

Downstream 100 bases:

>100_bases
TTGTACATTGGAGATACTGAATTCAGTATCTCCATTCGTGCTATCAACAAGTTTTGTATAAAAGGAGAAAATTTTTATGA
AGATCATCATGTTAGGGGCA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MLKTLRNAFKIKDVRNRILFTFMMLIVIRIGSELPIPGVKGSVFQSWLNSKSADGLGFVDAITGGSFSQMSVFALNITPY
ITSSIIMQLLTIAIPKLEEMQRDGEDGRKKIVEITRYLTIALGLLESVMMVIGFYRQNYLTEKTPLTVIMVVTSLTAGSA
VLMWIGERITEKGVGNGISIVLTINIISRIPEDLSTLWSQFIASAANIPKAIVAGLIIVAIIAAMVVFVVLLQDAQRKIP
VQYSSKIRGNKQMGGQQTCIPLKVNTSGVIPVIFAQSLMQTPVIIASFLGKGNGNGIGSKILKGLSQSNWCDPKEPVYSI
GLIVYIVLIIAFAYFYTNITFNPLEIANNMKRSGGFIPGIRPGKPTSDYLNQILNYIVFIGAIGLAFIAFVPIFFNGVFN
ADVSFGGTSIIIIVGVVIETLKQIESQMRVRYYKGFLDD

Sequences:

>Translated_439_residues
MLKTLRNAFKIKDVRNRILFTFMMLIVIRIGSELPIPGVKGSVFQSWLNSKSADGLGFVDAITGGSFSQMSVFALNITPY
ITSSIIMQLLTIAIPKLEEMQRDGEDGRKKIVEITRYLTIALGLLESVMMVIGFYRQNYLTEKTPLTVIMVVTSLTAGSA
VLMWIGERITEKGVGNGISIVLTINIISRIPEDLSTLWSQFIASAANIPKAIVAGLIIVAIIAAMVVFVVLLQDAQRKIP
VQYSSKIRGNKQMGGQQTCIPLKVNTSGVIPVIFAQSLMQTPVIIASFLGKGNGNGIGSKILKGLSQSNWCDPKEPVYSI
GLIVYIVLIIAFAYFYTNITFNPLEIANNMKRSGGFIPGIRPGKPTSDYLNQILNYIVFIGAIGLAFIAFVPIFFNGVFN
ADVSFGGTSIIIIVGVVIETLKQIESQMRVRYYKGFLDD
>Mature_439_residues
MLKTLRNAFKIKDVRNRILFTFMMLIVIRIGSELPIPGVKGSVFQSWLNSKSADGLGFVDAITGGSFSQMSVFALNITPY
ITSSIIMQLLTIAIPKLEEMQRDGEDGRKKIVEITRYLTIALGLLESVMMVIGFYRQNYLTEKTPLTVIMVVTSLTAGSA
VLMWIGERITEKGVGNGISIVLTINIISRIPEDLSTLWSQFIASAANIPKAIVAGLIIVAIIAAMVVFVVLLQDAQRKIP
VQYSSKIRGNKQMGGQQTCIPLKVNTSGVIPVIFAQSLMQTPVIIASFLGKGNGNGIGSKILKGLSQSNWCDPKEPVYSI
GLIVYIVLIIAFAYFYTNITFNPLEIANNMKRSGGFIPGIRPGKPTSDYLNQILNYIVFIGAIGLAFIAFVPIFFNGVFN
ADVSFGGTSIIIIVGVVIETLKQIESQMRVRYYKGFLDD

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=431, Percent_Identity=35.9628770301624, Blast_Score=253, Evalue=2e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48061; Mature: 48061

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTLRNAFKIKDVRNRILFTFMMLIVIRIGSELPIPGVKGSVFQSWLNSKSADGLGFVD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHH
AITGGSFSQMSVFALNITPYITSSIIMQLLTIAIPKLEEMQRDGEDGRKKIVEITRYLTI
HHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHH
ALGLLESVMMVIGFYRQNYLTEKTPLTVIMVVTSLTAGSAVLMWIGERITEKGVGNGISI
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEE
VLTINIISRIPEDLSTLWSQFIASAANIPKAIVAGLIIVAIIAAMVVFVVLLQDAQRKIP
EEEHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VQYSSKIRGNKQMGGQQTCIPLKVNTSGVIPVIFAQSLMQTPVIIASFLGKGNGNGIGSK
CHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ILKGLSQSNWCDPKEPVYSIGLIVYIVLIIAFAYFYTNITFNPLEIANNMKRSGGFIPGI
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC
RPGKPTSDYLNQILNYIVFIGAIGLAFIAFVPIFFNGVFNADVSFGGTSIIIIVGVVIET
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
LKQIESQMRVRYYKGFLDD
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLKTLRNAFKIKDVRNRILFTFMMLIVIRIGSELPIPGVKGSVFQSWLNSKSADGLGFVD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHH
AITGGSFSQMSVFALNITPYITSSIIMQLLTIAIPKLEEMQRDGEDGRKKIVEITRYLTI
HHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHH
ALGLLESVMMVIGFYRQNYLTEKTPLTVIMVVTSLTAGSAVLMWIGERITEKGVGNGISI
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEE
VLTINIISRIPEDLSTLWSQFIASAANIPKAIVAGLIIVAIIAAMVVFVVLLQDAQRKIP
EEEHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VQYSSKIRGNKQMGGQQTCIPLKVNTSGVIPVIFAQSLMQTPVIIASFLGKGNGNGIGSK
CHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ILKGLSQSNWCDPKEPVYSIGLIVYIVLIIAFAYFYTNITFNPLEIANNMKRSGGFIPGI
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC
RPGKPTSDYLNQILNYIVFIGAIGLAFIAFVPIFFNGVFNADVSFGGTSIIIIVGVVIET
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
LKQIESQMRVRYYKGFLDD
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA