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The map label for this gene is nudC [H]

Identifier: 238922730

GI number: 238922730

Start: 284087

End: 284971

Strand: Direct

Name: nudC [H]

Synonym: EUBREC_0306

Alternate gene names: 238922730

Gene position: 284087-284971 (Clockwise)

Preceding gene: 238922729

Following gene: 238922731

Centisome position: 8.24

GC content: 46.33

Gene sequence:

>885_bases
ATGATTCAAGACATTGCACCACATACGTGGGACATAACATACAAAAACATACAGCCGGACCCGGACAGCAGGGTCCTTTT
TTTTAGCAGGGGACAGCTTCTTGTGCAGCAGGCATCGGACATGTCTGCTGACGAATCCAATCAGGATATTCATCAGATAA
GCTTTCCAAGATATGAGGATATAAAAGCAGAATGTCCCGATGCTAAATATCAGTATCTGTTTACACTTGACGATACTGCA
TTTTTCAGGGTGGCACTGTCACATGCTGACAAAATGCATATACTGGAAGTAACAGGTGGCAAATTCATAAACCGGCACTA
TATGCGCAGCGCGGCACCGAAGGAGTACGTGCTTGCCGCGATAACGGGATTTCATCTGGATGGCTGGTATGATAAGAACC
ATTTCTGCGGCAGATGCGCCAACAGGCTGGTAGAGGACGACGTGGAGCGCATGCTCAGATGTCCGGTCTGTGGCAACATG
GTTTACCCGCGCATCAATCCGGCAGTGATAGTGGGAGTTACAAATGGAGATAAGCTGCTTTTGACAAAATACAATGGCAG
AGAGTATAAAAAGTACGCACTTGTGGCAGGCTTTAACGAGATAGGTGAGTCACTTGAGGAGACCGTGCGCCGTGAGGTCA
TGGAGGAAACAGGACTGCGTGTGAAAAACATCAGATACTACAAATCGCAGCCGTGGGGCTTTACCGACAATATACTAGCG
GGATATTTCTGTGAAGTTGACGGAACAGATGAGATTGAGGTTGACATGCAGGAACTTTCGATGGCAAAATGGGTGTCAAG
AGAAGAAATACCTACATCCCTAGAGGAATTAAGCCTGACAAATGAAATGATTTCTGTTTTTCGGCTTGACAAAGGCGATT
TCTGA

Upstream 100 bases:

>100_bases
AGGCGAATTTTCGGTTGTAGTGGCACGGGTTTATACGCGCGTATAAACACCGTCTGATAACATAGTTAATCAGCGGAAAT
AAGGAAAATCGAGGCATACA

Downstream 100 bases:

>100_bases
ATGTATAGTAAAGCAGTAGGAAATGAAACAGAGGTGCTATAAATGAAAATTTCAACAAAAGGACGTTATGCTCTTCGCCT
CATGATGGATCTTGCAGAGA

Product: pyrophosphatase (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MIQDIAPHTWDITYKNIQPDPDSRVLFFSRGQLLVQQASDMSADESNQDIHQISFPRYEDIKAECPDAKYQYLFTLDDTA
FFRVALSHADKMHILEVTGGKFINRHYMRSAAPKEYVLAAITGFHLDGWYDKNHFCGRCANRLVEDDVERMLRCPVCGNM
VYPRINPAVIVGVTNGDKLLLTKYNGREYKKYALVAGFNEIGESLEETVRREVMEETGLRVKNIRYYKSQPWGFTDNILA
GYFCEVDGTDEIEVDMQELSMAKWVSREEIPTSLEELSLTNEMISVFRLDKGDF

Sequences:

>Translated_294_residues
MIQDIAPHTWDITYKNIQPDPDSRVLFFSRGQLLVQQASDMSADESNQDIHQISFPRYEDIKAECPDAKYQYLFTLDDTA
FFRVALSHADKMHILEVTGGKFINRHYMRSAAPKEYVLAAITGFHLDGWYDKNHFCGRCANRLVEDDVERMLRCPVCGNM
VYPRINPAVIVGVTNGDKLLLTKYNGREYKKYALVAGFNEIGESLEETVRREVMEETGLRVKNIRYYKSQPWGFTDNILA
GYFCEVDGTDEIEVDMQELSMAKWVSREEIPTSLEELSLTNEMISVFRLDKGDF
>Mature_294_residues
MIQDIAPHTWDITYKNIQPDPDSRVLFFSRGQLLVQQASDMSADESNQDIHQISFPRYEDIKAECPDAKYQYLFTLDDTA
FFRVALSHADKMHILEVTGGKFINRHYMRSAAPKEYVLAAITGFHLDGWYDKNHFCGRCANRLVEDDVERMLRCPVCGNM
VYPRINPAVIVGVTNGDKLLLTKYNGREYKKYALVAGFNEIGESLEETVRREVMEETGLRVKNIRYYKSQPWGFTDNILA
GYFCEVDGTDEIEVDMQELSMAKWVSREEIPTSLEELSLTNEMISVFRLDKGDF

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI50593112, Length=149, Percent_Identity=36.241610738255, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI13899267, Length=153, Percent_Identity=33.9869281045752, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI48994995, Length=149, Percent_Identity=36.241610738255, Blast_Score=116, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI212645999, Length=294, Percent_Identity=25.5102040816327, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71986510, Length=181, Percent_Identity=29.8342541436464, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321371, Length=173, Percent_Identity=31.7919075144509, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020476
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 33905; Mature: 33905

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQDIAPHTWDITYKNIQPDPDSRVLFFSRGQLLVQQASDMSADESNQDIHQISFPRYED
CCCCCCCCEEEEEECCCCCCCCCEEEEEECCEEEEHHHCCCCCCCCCCCHHCCCCCCCCC
IKAECPDAKYQYLFTLDDTAFFRVALSHADKMHILEVTGGKFINRHYMRSAAPKEYVLAA
CCCCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCHHHEEEE
ITGFHLDGWYDKNHFCGRCANRLVEDDVERMLRCPVCGNMVYPRINPAVIVGVTNGDKLL
HHEEEECCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCCEEE
LTKYNGREYKKYALVAGFNEIGESLEETVRREVMEETGLRVKNIRYYKSQPWGFTDNILA
EEECCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCE
GYFCEVDGTDEIEVDMQELSMAKWVSREEIPTSLEELSLTNEMISVFRLDKGDF
EEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIQDIAPHTWDITYKNIQPDPDSRVLFFSRGQLLVQQASDMSADESNQDIHQISFPRYED
CCCCCCCCEEEEEECCCCCCCCCEEEEEECCEEEEHHHCCCCCCCCCCCHHCCCCCCCCC
IKAECPDAKYQYLFTLDDTAFFRVALSHADKMHILEVTGGKFINRHYMRSAAPKEYVLAA
CCCCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCHHHEEEE
ITGFHLDGWYDKNHFCGRCANRLVEDDVERMLRCPVCGNMVYPRINPAVIVGVTNGDKLL
HHEEEECCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCCEEE
LTKYNGREYKKYALVAGFNEIGESLEETVRREVMEETGLRVKNIRYYKSQPWGFTDNILA
EEECCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCE
GYFCEVDGTDEIEVDMQELSMAKWVSREEIPTSLEELSLTNEMISVFRLDKGDF
EEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA