Click here to switch to the map view.

The map label for this gene is deoB

Identifier: 238922721

GI number: 238922721

Start: 277048

End: 278235

Strand: Direct

Name: deoB

Synonym: EUBREC_0296

Alternate gene names: 238922721

Gene position: 277048-278235 (Clockwise)

Preceding gene: 238922720

Following gene: 238922722

Centisome position: 8.03

GC content: 48.4

Gene sequence:

>1188_bases
ATGAAGAAATACAACAGAATTTTTGTGATAGTCCTGGATTCTCTGGGAATCGGCGCGATGCCGGACTCGGAAAGGTTTGG
AGACACAGATGTAGACACCTTTGGACATATACTTGAGAGGATGCAGACTCTCGACATCCCAAATCTTACAAGGCTTGGAA
TGCTCAATCTGCACTGTGGCGGTCAGATGCAGCCGGCTGCTGAGCCAATCGGCAGATTTACGCGGTTGGCAGAGGCAAGC
AATGGCAAGGACACGATGACAGGCCACTGGGAGATGATGGGCATAAAAACCGAAAAGCCCTTTAAGACCTTCACAGAGCA
CGGATTTCCACCGGAGCTCATCGCTGAGCTTGAGAAGCAGTGCGGAAAAAAGGTCATAGGCAACAAGAGCGCCAGCGGCA
CTGAGATAATCGAGGAGCTCGGAGAGGAAGAGATAAAGAACGGTTCGATGATTGTATACACGTCAGCGGATTCGGTGCTT
CAGATTTGCGGTAATGAGGAGACCTTTGATTTACAGAATCTCTACCGCTGCTGTGAGATAGCCAGAAAAATAACACTCAA
GGACGAGTGGAGAGTAGGGCGCGTCATTGCAAGGCCATATGTGGGAAAGAAAAAGGGTGAGTTCGTGCGAACCTCAAACA
GGCACGACTATGCGCTTAAGCCTACAGGTCTTACTGCATTAAATGCATTAAAGGACAGTGGACTGGATGTCATTTCAGTC
GGCAAAATCAATGATATTTTCTGCGGAGAGGGCATTACAGAGGCATTCCGCTCAAAGAGCTCGGTTCATGGAATGGAGCA
GACCATTGATATTTGTGAGAAAGATTTTACCGGGCTGTGCTTTGTGAATCTGGTCGATTTCGATGCACTGTGGGGACACC
GCAGAAATGTGACAGGCTACGGAGAGGAAATTGAGAAATTCGACAAAAATCTGGGCATTTTAATGGAAAAGCTAAGGGAT
GATGATCTGCTCATACTGACCGCAGACCACGGAAACGACCCTACCTACAAGGGAACGGACCACACACGCGAGTATGTGCC
GTTTATCGCGTATTCAAAGAGCATGAAGGGCGGCGGTGCAATTGAGGAGGAAGCCACCTTTGCGGTAATTGGAGCCACAA
TTACTGACAACTTCGGCGTAAAAATGCCGGAGGGTACCATCGGACATTCTATTCTTGAAGAGCTTTAA

Upstream 100 bases:

>100_bases
GCGGATTTTCAGACAGCTGGTATAGTGCCGTGAGACTTATGGAGATTTAACAGCTCCCCGCTGTGCAAATTTACGGACCG
GAAAATGGAGGTATGACACT

Downstream 100 bases:

>100_bases
GGGGTAATATCTCAGGAATTTTTTAAACTTTAACAGAAAATATATGGAGAAAAAAATGAACAGTATATATGAAAAACTTA
CCACATGCCTTGCAAGTGTG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MKKYNRIFVIVLDSLGIGAMPDSERFGDTDVDTFGHILERMQTLDIPNLTRLGMLNLHCGGQMQPAAEPIGRFTRLAEAS
NGKDTMTGHWEMMGIKTEKPFKTFTEHGFPPELIAELEKQCGKKVIGNKSASGTEIIEELGEEEIKNGSMIVYTSADSVL
QICGNEETFDLQNLYRCCEIARKITLKDEWRVGRVIARPYVGKKKGEFVRTSNRHDYALKPTGLTALNALKDSGLDVISV
GKINDIFCGEGITEAFRSKSSVHGMEQTIDICEKDFTGLCFVNLVDFDALWGHRRNVTGYGEEIEKFDKNLGILMEKLRD
DDLLILTADHGNDPTYKGTDHTREYVPFIAYSKSMKGGGAIEEEATFAVIGATITDNFGVKMPEGTIGHSILEEL

Sequences:

>Translated_395_residues
MKKYNRIFVIVLDSLGIGAMPDSERFGDTDVDTFGHILERMQTLDIPNLTRLGMLNLHCGGQMQPAAEPIGRFTRLAEAS
NGKDTMTGHWEMMGIKTEKPFKTFTEHGFPPELIAELEKQCGKKVIGNKSASGTEIIEELGEEEIKNGSMIVYTSADSVL
QICGNEETFDLQNLYRCCEIARKITLKDEWRVGRVIARPYVGKKKGEFVRTSNRHDYALKPTGLTALNALKDSGLDVISV
GKINDIFCGEGITEAFRSKSSVHGMEQTIDICEKDFTGLCFVNLVDFDALWGHRRNVTGYGEEIEKFDKNLGILMEKLRD
DDLLILTADHGNDPTYKGTDHTREYVPFIAYSKSMKGGGAIEEEATFAVIGATITDNFGVKMPEGTIGHSILEEL
>Mature_395_residues
MKKYNRIFVIVLDSLGIGAMPDSERFGDTDVDTFGHILERMQTLDIPNLTRLGMLNLHCGGQMQPAAEPIGRFTRLAEAS
NGKDTMTGHWEMMGIKTEKPFKTFTEHGFPPELIAELEKQCGKKVIGNKSASGTEIIEELGEEEIKNGSMIVYTSADSVL
QICGNEETFDLQNLYRCCEIARKITLKDEWRVGRVIARPYVGKKKGEFVRTSNRHDYALKPTGLTALNALKDSGLDVISV
GKINDIFCGEGITEAFRSKSSVHGMEQTIDICEKDFTGLCFVNLVDFDALWGHRRNVTGYGEEIEKFDKNLGILMEKLRD
DDLLILTADHGNDPTYKGTDHTREYVPFIAYSKSMKGGGAIEEEATFAVIGATITDNFGVKMPEGTIGHSILEEL

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=397, Percent_Identity=46.095717884131, Blast_Score=322, Evalue=3e-89,
Organism=Escherichia coli, GI1789781, Length=432, Percent_Identity=25.9259259259259, Blast_Score=119, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_EUBR3 (C4ZB25)

Other databases:

- EMBL:   CP001107
- RefSeq:   YP_002936234.1
- ProteinModelPortal:   C4ZB25
- GeneID:   7964235
- GenomeReviews:   CP001107_GR
- KEGG:   ere:EUBREC_0296
- ProtClustDB:   PRK05362
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 43896; Mature: 43896

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYNRIFVIVLDSLGIGAMPDSERFGDTDVDTFGHILERMQTLDIPNLTRLGMLNLHCG
CCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCEEEECCC
GQMQPAAEPIGRFTRLAEASNGKDTMTGHWEMMGIKTEKPFKTFTEHGFPPELIAELEKQ
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCHHHHHHHHHH
CGKKVIGNKSASGTEIIEELGEEEIKNGSMIVYTSADSVLQICGNEETFDLQNLYRCCEI
HCHHHHCCCCCCHHHHHHHHCHHHHCCCCEEEEECCHHHHHHHCCCCCCCHHHHHHHHHH
ARKITLKDEWRVGRVIARPYVGKKKGEFVRTSNRHDYALKPTGLTALNALKDSGLDVISV
HHHCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCEEECCCCHHHHHHHHHCCCCEEEE
GKINDIFCGEGITEAFRSKSSVHGMEQTIDICEKDFTGLCFVNLVDFDALWGHRRNVTGY
CCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCCCCCC
GEEIEKFDKNLGILMEKLRDDDLLILTADHGNDPTYKGTDHTREYVPFIAYSKSMKGGGA
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCEEECCCCCCCCC
IEEEATFAVIGATITDNFGVKMPEGTIGHSILEEL
CCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHC
>Mature Secondary Structure
MKKYNRIFVIVLDSLGIGAMPDSERFGDTDVDTFGHILERMQTLDIPNLTRLGMLNLHCG
CCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCEEEECCC
GQMQPAAEPIGRFTRLAEASNGKDTMTGHWEMMGIKTEKPFKTFTEHGFPPELIAELEKQ
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCHHHHHHHHHH
CGKKVIGNKSASGTEIIEELGEEEIKNGSMIVYTSADSVLQICGNEETFDLQNLYRCCEI
HCHHHHCCCCCCHHHHHHHHCHHHHCCCCEEEEECCHHHHHHHCCCCCCCHHHHHHHHHH
ARKITLKDEWRVGRVIARPYVGKKKGEFVRTSNRHDYALKPTGLTALNALKDSGLDVISV
HHHCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCEEECCCCHHHHHHHHHCCCCEEEE
GKINDIFCGEGITEAFRSKSSVHGMEQTIDICEKDFTGLCFVNLVDFDALWGHRRNVTGY
CCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCCCCCC
GEEIEKFDKNLGILMEKLRDDDLLILTADHGNDPTYKGTDHTREYVPFIAYSKSMKGGGA
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCEEECCCCCCCCC
IEEEATFAVIGATITDNFGVKMPEGTIGHSILEEL
CCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA