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The map label for this gene is yukF [H]

Identifier: 238922607

GI number: 238922607

Start: 172462

End: 173625

Strand: Direct

Name: yukF [H]

Synonym: EUBREC_0181

Alternate gene names: 238922607

Gene position: 172462-173625 (Clockwise)

Preceding gene: 238922606

Following gene: 238922608

Centisome position: 5.0

GC content: 44.42

Gene sequence:

>1164_bases
ATGGACGGAATGGAGCTTGTGGCGGGAGCAACAGGGCTTGACCGGATGGTGTCATGGACGTATCTGGTGCAGACAAAGCC
TTATAAGGATCATATGAATCCGGGCAACTTTGCGCTGCTTGTGGTAGATTATAAGAGATTTTCCATGGACGAGGCATATG
ATGCCATGGTTGAGCTGAATGAGCTGGGAATATCGGGTTTTGCGATTTCGGTTGTGGAGGACAGGGAAGAGACCCCGCAG
AGGATGAAGGACAAGGCTGATGAGCTCAAGCTGCCGTTGTTTTATATCCGGTGGGAAGGAGCTACTTTTGTAGATATTGC
GCAGAGCGTCGGAGAGCTGCTTTTAGAGACCAGTGTGGATAATAAAAGGACCGGGGACTACCTGTACAATCTGCTTTTTG
GATATGAGGTAAATGATAAGTATATCGAGAAGATTTCTGCACAGTTTGGTCTGACCTTTGACCGGCCGTACAGAGTGGGA
ATCATCGTGATAGACCGCAAATACGGAGTGAATCTGGAGCAGGACGAGCACACATATACATACTATACCGACTGCCTGAA
CCGCGAGGTTATCCATATGAAGAAAAAGCCTATGTATATGAGGTTTTTGAACAAATTTGTGCTTCTTTTTGAGGAGACAA
AGGATATGGAGACAGAGCATCAGATTGAAAGGATACTTGGGGATTTAGACAGTCGTGCACCATTTGCAGGGCTCATTCAC
AGCACATGCATACTCGGTGCTGCATACAGGAAGCCTGCGGATTTTGGCAAGAGCTATCAGGAGGCGAAAAATCTCATCCC
CAAAAAGGATATTTTACCCAATCCGACCAACAAGAAGGTAATCAGTGCTAGCTCCATGGGCATATACAAGTATATGTTCA
ACAGTGGCAATCAGCAGGAAATCATGGATTATTGCAACGAGAAGCTAAAGCGGCTTGAGATGTATGACAATGCAAACGGC
TCGTTTCTCATAGATACGCTGCTCAATTATTATATGTGTGGCTTTAATGTCGGAAAAACGGCACAGATTATGTACGTTCA
TCGTAATTCCCTGCAATACCGTCTGAAAAAGATAGAGGAAATACTGGAAATCAGCCTTGATGACTCGATGGAATATCTGG
ATGTAGTTAATTGTATTCTTGTAAAAAGGCTTATGTTTAATTAG

Upstream 100 bases:

>100_bases
GTGGATATAAGTAATGTGAAGCAGCTTGGGATAATTACCGAAGCTTAATGTTATCAGGGAGACGCAGATGATTTCATGCA
GGGATGTTAACAATTTACAA

Downstream 100 bases:

>100_bases
TCACTGTAAAAATGCACAAACAAATTGTGCAAAATTAACATTGCAAAGCTGCTTCATTAAGTTTATTATACGAACTAAGC
AAAGGCGCTGGAGAAAAACT

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MDGMELVAGATGLDRMVSWTYLVQTKPYKDHMNPGNFALLVVDYKRFSMDEAYDAMVELNELGISGFAISVVEDREETPQ
RMKDKADELKLPLFYIRWEGATFVDIAQSVGELLLETSVDNKRTGDYLYNLLFGYEVNDKYIEKISAQFGLTFDRPYRVG
IIVIDRKYGVNLEQDEHTYTYYTDCLNREVIHMKKKPMYMRFLNKFVLLFEETKDMETEHQIERILGDLDSRAPFAGLIH
STCILGAAYRKPADFGKSYQEAKNLIPKKDILPNPTNKKVISASSMGIYKYMFNSGNQQEIMDYCNEKLKRLEMYDNANG
SFLIDTLLNYYMCGFNVGKTAQIMYVHRNSLQYRLKKIEEILEISLDDSMEYLDVVNCILVKRLMFN

Sequences:

>Translated_387_residues
MDGMELVAGATGLDRMVSWTYLVQTKPYKDHMNPGNFALLVVDYKRFSMDEAYDAMVELNELGISGFAISVVEDREETPQ
RMKDKADELKLPLFYIRWEGATFVDIAQSVGELLLETSVDNKRTGDYLYNLLFGYEVNDKYIEKISAQFGLTFDRPYRVG
IIVIDRKYGVNLEQDEHTYTYYTDCLNREVIHMKKKPMYMRFLNKFVLLFEETKDMETEHQIERILGDLDSRAPFAGLIH
STCILGAAYRKPADFGKSYQEAKNLIPKKDILPNPTNKKVISASSMGIYKYMFNSGNQQEIMDYCNEKLKRLEMYDNANG
SFLIDTLLNYYMCGFNVGKTAQIMYVHRNSLQYRLKKIEEILEISLDDSMEYLDVVNCILVKRLMFN
>Mature_387_residues
MDGMELVAGATGLDRMVSWTYLVQTKPYKDHMNPGNFALLVVDYKRFSMDEAYDAMVELNELGISGFAISVVEDREETPQ
RMKDKADELKLPLFYIRWEGATFVDIAQSVGELLLETSVDNKRTGDYLYNLLFGYEVNDKYIEKISAQFGLTFDRPYRVG
IIVIDRKYGVNLEQDEHTYTYYTDCLNREVIHMKKKPMYMRFLNKFVLLFEETKDMETEHQIERILGDLDSRAPFAGLIH
STCILGAAYRKPADFGKSYQEAKNLIPKKDILPNPTNKKVISASSMGIYKYMFNSGNQQEIMDYCNEKLKRLEMYDNANG
SFLIDTLLNYYMCGFNVGKTAQIMYVHRNSLQYRLKKIEEILEISLDDSMEYLDVVNCILVKRLMFN

Specific function: Unknown

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010312 [H]

Pfam domain/function: PF06018 CodY [H]

EC number: NA

Molecular weight: Translated: 44977; Mature: 44977

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGMELVAGATGLDRMVSWTYLVQTKPYKDHMNPGNFALLVVDYKRFSMDEAYDAMVELN
CCCHHHHCCCCCHHHHHEEEEEEEECCCCCCCCCCCEEEEEEECCHHCHHHHHHHHHHHH
ELGISGFAISVVEDREETPQRMKDKADELKLPLFYIRWEGATFVDIAQSVGELLLETSVD
HCCCCCEEEEEECCCCCCHHHHHCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
NKRTGDYLYNLLFGYEVNDKYIEKISAQFGLTFDRPYRVGIIVIDRKYGVNLEQDEHTYT
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCEEEEEEEEECCCCCCCCCCCCCEE
YYTDCLNREVIHMKKKPMYMRFLNKFVLLFEETKDMETEHQIERILGDLDSRAPFAGLIH
EEHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHH
STCILGAAYRKPADFGKSYQEAKNLIPKKDILPNPTNKKVISASSMGIYKYMFNSGNQQE
HHHHHHHHHCCCHHHCHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCHHH
IMDYCNEKLKRLEMYDNANGSFLIDTLLNYYMCGFNVGKTAQIMYVHRNSLQYRLKKIEE
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHH
ILEISLDDSMEYLDVVNCILVKRLMFN
HHHHCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDGMELVAGATGLDRMVSWTYLVQTKPYKDHMNPGNFALLVVDYKRFSMDEAYDAMVELN
CCCHHHHCCCCCHHHHHEEEEEEEECCCCCCCCCCCEEEEEEECCHHCHHHHHHHHHHHH
ELGISGFAISVVEDREETPQRMKDKADELKLPLFYIRWEGATFVDIAQSVGELLLETSVD
HCCCCCEEEEEECCCCCCHHHHHCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
NKRTGDYLYNLLFGYEVNDKYIEKISAQFGLTFDRPYRVGIIVIDRKYGVNLEQDEHTYT
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCEEEEEEEEECCCCCCCCCCCCCEE
YYTDCLNREVIHMKKKPMYMRFLNKFVLLFEETKDMETEHQIERILGDLDSRAPFAGLIH
EEHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHH
STCILGAAYRKPADFGKSYQEAKNLIPKKDILPNPTNKKVISASSMGIYKYMFNSGNQQE
HHHHHHHHHCCCHHHCHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCHHH
IMDYCNEKLKRLEMYDNANGSFLIDTLLNYYMCGFNVGKTAQIMYVHRNSLQYRLKKIEE
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHH
ILEISLDDSMEYLDVVNCILVKRLMFN
HHHHCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9168598; 9384377 [H]