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The map label for this gene is atpD [H]

Identifier: 238922550

GI number: 238922550

Start: 118874

End: 120265

Strand: Direct

Name: atpD [H]

Synonym: EUBREC_0124

Alternate gene names: 238922550

Gene position: 118874-120265 (Clockwise)

Preceding gene: 238922549

Following gene: 238922551

Centisome position: 3.45

GC content: 50.93

Gene sequence:

>1392_bases
ATGGCAGATAAAAATGTAGGTAAAATCATACAGGTTATCAGTGCCGTTCTGGATATCAAGTTTTCAGAGGGTAATCTGCC
TGAGATAAACGATGCAGTCGAGGTGCCGCTGAAAAACGGCGGAAAGCTGGTCGTTGAGGTTGCACAGCATCTGGGCGACG
ATACAGTCAGATGTATCGCCATGGGACCTACTGATGGTCTCGTCCGCGGCATGGACGCTATCGCAACAGGAGCACCTATT
TCTGTGCCGGTGGGGGAGAATACACTTGGAAGAATGTTCAATGTGCTCGGAGAGCCTATCGATGAGGTTGAGCCTCCACA
GACAGAGGAGAAATGGGCAATCCACAGACCTGCGCCTAGCTTTGAGGAGCAGGCTACATCGCAGGAGATGCTTGAGACAG
GAATAAAGGTTGTAGATTTACTCTGCCCATACCAGAAGGGTGGAAAAATCGGACTCTTCGGAGGTGCCGGAGTAGGAAAG
ACGGTGCTCATCCAGGAGCTTATCCACAACATCGCTACACAGCATGGTGGATACTCAGTATTTACCGGTGTAGGAGAGCG
TACACGAGAGGGAAATGACCTGTACTACGAGATGAAGGAGTCAGGTGTTATAGACAAGACCACCATGGTGTTCGGACAGA
TGAACGAGCCACCTGGAGCACGTATGAGAGTTGCCCTGGCAGGACTTACAATGGCAGAGTATTTCCGTGACAGAGGCGGC
AAGGATGTGCTTCTCTTTGTGGACAATATCTTCCGTTTCACACAGGCAGGTTCAGAGGTATCAGCGCTTTTAGGACGTAT
GCCTTCAGCCGTTGGTTACCAGCCGACACTGCAGACAGAGATGGGAGCTCTTCAGGAGCGTATCACATCAACAAAGAACG
GTTCAATCACATCGGTTCAGGCCGTATATGTGCCTGCAGATGACCTTACAGACCCGGCACCGGCGACTACCTTCGCACAC
CTCGATGCCACGACAGTACTTGAGCGTTCTATCGCAGAGCTTGGTATTTATCCGGCTGTAGACCCGCTGGCATCTACATC
GCGTATCCTTGATCCGCGTATCGTGGGACAGGAGCATTTTGAGGTGGCACACGCTGTCCAGGAGATACTCCAGAAGTACA
AGGAGCTGCAGGATATCATCGCAATCCTCGGTATGGATGAGCTCTCAGAGGAGGATAAGCTCGTAGTAAGCCGTGCACGT
AAGGTGCAGCGTTTCCTGTCACAGCCGTTCTTCGTAGCAGGACAGTTTACAGGACTCGAGGGCAAATATGTGCCTATCGC
CGAGACCATCAGAGGATTTAAGGAGATACTCGAAGGAAAGCATGATGATGTACCGGAGAGCTATTTCTTAAACGTTGGAA
GCATAGATGAAGTCCGTGCCAAGATGCAGTAA

Upstream 100 bases:

>100_bases
ATACATGCATATCCGGTCATGGGAAGGCAGGCATGTGTGTCTGTGAATGGCCAAAAAGGCGAGTGTATCATATGAATTAA
AAAAGAAGGAGAAACTATAA

Downstream 100 bases:

>100_bases
TGTGAGGTGATTTCATGGCAGATAACATTTTTGACATAGAAATAATCACACCGGACAGGGTGTTCTACAAGGGAGAGACA
GATTTCCTCGAGTTCAATAC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MADKNVGKIIQVISAVLDIKFSEGNLPEINDAVEVPLKNGGKLVVEVAQHLGDDTVRCIAMGPTDGLVRGMDAIATGAPI
SVPVGENTLGRMFNVLGEPIDEVEPPQTEEKWAIHRPAPSFEEQATSQEMLETGIKVVDLLCPYQKGGKIGLFGGAGVGK
TVLIQELIHNIATQHGGYSVFTGVGERTREGNDLYYEMKESGVIDKTTMVFGQMNEPPGARMRVALAGLTMAEYFRDRGG
KDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTKNGSITSVQAVYVPADDLTDPAPATTFAH
LDATTVLERSIAELGIYPAVDPLASTSRILDPRIVGQEHFEVAHAVQEILQKYKELQDIIAILGMDELSEEDKLVVSRAR
KVQRFLSQPFFVAGQFTGLEGKYVPIAETIRGFKEILEGKHDDVPESYFLNVGSIDEVRAKMQ

Sequences:

>Translated_463_residues
MADKNVGKIIQVISAVLDIKFSEGNLPEINDAVEVPLKNGGKLVVEVAQHLGDDTVRCIAMGPTDGLVRGMDAIATGAPI
SVPVGENTLGRMFNVLGEPIDEVEPPQTEEKWAIHRPAPSFEEQATSQEMLETGIKVVDLLCPYQKGGKIGLFGGAGVGK
TVLIQELIHNIATQHGGYSVFTGVGERTREGNDLYYEMKESGVIDKTTMVFGQMNEPPGARMRVALAGLTMAEYFRDRGG
KDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTKNGSITSVQAVYVPADDLTDPAPATTFAH
LDATTVLERSIAELGIYPAVDPLASTSRILDPRIVGQEHFEVAHAVQEILQKYKELQDIIAILGMDELSEEDKLVVSRAR
KVQRFLSQPFFVAGQFTGLEGKYVPIAETIRGFKEILEGKHDDVPESYFLNVGSIDEVRAKMQ
>Mature_462_residues
ADKNVGKIIQVISAVLDIKFSEGNLPEINDAVEVPLKNGGKLVVEVAQHLGDDTVRCIAMGPTDGLVRGMDAIATGAPIS
VPVGENTLGRMFNVLGEPIDEVEPPQTEEKWAIHRPAPSFEEQATSQEMLETGIKVVDLLCPYQKGGKIGLFGGAGVGKT
VLIQELIHNIATQHGGYSVFTGVGERTREGNDLYYEMKESGVIDKTTMVFGQMNEPPGARMRVALAGLTMAEYFRDRGGK
DVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTKNGSITSVQAVYVPADDLTDPAPATTFAHL
DATTVLERSIAELGIYPAVDPLASTSRILDPRIVGQEHFEVAHAVQEILQKYKELQDIIAILGMDELSEEDKLVVSRARK
VQRFLSQPFFVAGQFTGLEGKYVPIAETIRGFKEILEGKHDDVPESYFLNVGSIDEVRAKMQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=70.3862660944206, Blast_Score=646, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=405, Percent_Identity=25.4320987654321, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI19913424, Length=342, Percent_Identity=27.1929824561404, Blast_Score=119, Evalue=8e-27,
Organism=Homo sapiens, GI19913426, Length=407, Percent_Identity=24.3243243243243, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI50345984, Length=419, Percent_Identity=26.2529832935561, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI4757810, Length=419, Percent_Identity=26.2529832935561, Blast_Score=107, Evalue=2e-23,
Organism=Escherichia coli, GI1790170, Length=458, Percent_Identity=69.8689956331878, Blast_Score=643, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=303, Percent_Identity=30.03300330033, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1790172, Length=391, Percent_Identity=27.1099744245524, Blast_Score=127, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI25144756, Length=463, Percent_Identity=69.1144708423326, Blast_Score=637, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=350, Percent_Identity=26.8571428571429, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17510931, Length=415, Percent_Identity=24.8192771084337, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17570191, Length=407, Percent_Identity=24.0786240786241, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI71988080, Length=392, Percent_Identity=25.5102040816327, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=392, Percent_Identity=25.5102040816327, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=343, Percent_Identity=24.198250728863, Blast_Score=84, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=457, Percent_Identity=70.4595185995624, Blast_Score=646, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=401, Percent_Identity=25.1870324189526, Blast_Score=126, Evalue=6e-30,
Organism=Saccharomyces cerevisiae, GI6319370, Length=396, Percent_Identity=25, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6320016, Length=231, Percent_Identity=27.7056277056277, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24638766, Length=461, Percent_Identity=70.7158351409978, Blast_Score=640, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=461, Percent_Identity=65.943600867679, Blast_Score=594, Evalue=1e-170,
Organism=Drosophila melanogaster, GI20129479, Length=484, Percent_Identity=25.8264462809917, Blast_Score=132, Evalue=6e-31,
Organism=Drosophila melanogaster, GI24583988, Length=348, Percent_Identity=27.0114942528736, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24583986, Length=348, Percent_Identity=27.0114942528736, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24583984, Length=348, Percent_Identity=27.0114942528736, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24583992, Length=347, Percent_Identity=26.8011527377522, Blast_Score=121, Evalue=8e-28,
Organism=Drosophila melanogaster, GI281361666, Length=411, Percent_Identity=25.3041362530414, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24646341, Length=411, Percent_Identity=25.3041362530414, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI17136796, Length=411, Percent_Identity=25.3041362530414, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24658560, Length=393, Percent_Identity=25.6997455470738, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=55.4347826086957, Blast_Score=95, Evalue=1e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50363; Mature: 50232

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADKNVGKIIQVISAVLDIKFSEGNLPEINDAVEVPLKNGGKLVVEVAQHLGDDTVRCIA
CCCCHHHHHHHHHHHHHCEEECCCCCCCCCCHHCCCCCCCCCHHHHHHHHCCCCCEEEEE
MGPTDGLVRGMDAIATGAPISVPVGENTLGRMFNVLGEPIDEVEPPQTEEKWAIHRPAPS
ECCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCCC
FEEQATSQEMLETGIKVVDLLCPYQKGGKIGLFGGAGVGKTVLIQELIHNIATQHGGYSV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
FTGVGERTREGNDLYYEMKESGVIDKTTMVFGQMNEPPGARMRVALAGLTMAEYFRDRGG
EECCCCCCCCCCCEEEEECCCCCCCHHHHEEECCCCCCCCCEEHHHHHHHHHHHHHHCCC
KDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTKNGSITSVQ
CEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
AVYVPADDLTDPAPATTFAHLDATTVLERSIAELGIYPAVDPLASTSRILDPRIVGQEHF
EEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHCCHHHH
EVAHAVQEILQKYKELQDIIAILGMDELSEEDKLVVSRARKVQRFLSQPFFVAGQFTGLE
HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
GKYVPIAETIRGFKEILEGKHDDVPESYFLNVGSIDEVRAKMQ
CCCCCHHHHHHHHHHHHCCCCCCCCHHHEECCCCHHHHHHHCC
>Mature Secondary Structure 
ADKNVGKIIQVISAVLDIKFSEGNLPEINDAVEVPLKNGGKLVVEVAQHLGDDTVRCIA
CCCHHHHHHHHHHHHHCEEECCCCCCCCCCHHCCCCCCCCCHHHHHHHHCCCCCEEEEE
MGPTDGLVRGMDAIATGAPISVPVGENTLGRMFNVLGEPIDEVEPPQTEEKWAIHRPAPS
ECCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCCC
FEEQATSQEMLETGIKVVDLLCPYQKGGKIGLFGGAGVGKTVLIQELIHNIATQHGGYSV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
FTGVGERTREGNDLYYEMKESGVIDKTTMVFGQMNEPPGARMRVALAGLTMAEYFRDRGG
EECCCCCCCCCCCEEEEECCCCCCCHHHHEEECCCCCCCCCEEHHHHHHHHHHHHHHCCC
KDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTKNGSITSVQ
CEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
AVYVPADDLTDPAPATTFAHLDATTVLERSIAELGIYPAVDPLASTSRILDPRIVGQEHF
EEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHCCHHHH
EVAHAVQEILQKYKELQDIIAILGMDELSEEDKLVVSRARKVQRFLSQPFFVAGQFTGLE
HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
GKYVPIAETIRGFKEILEGKHDDVPESYFLNVGSIDEVRAKMQ
CCCCCHHHHHHHHHHHHCCCCCCCCHHHEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA