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The map label for this gene is csrA

Identifier: 238922537

GI number: 238922537

Start: 108708

End: 108926

Strand: Direct

Name: csrA

Synonym: EUBREC_0111

Alternate gene names: 238922537

Gene position: 108708-108926 (Clockwise)

Preceding gene: 238922536

Following gene: 238922538

Centisome position: 3.15

GC content: 46.12

Gene sequence:

>219_bases
ATGCTGGCTCTTACAAGAAAAAAGGGTGAATCTCTGGTGATTAATAATGACATCGAGATTACTATTCTGGAAATCAGAGG
CGACCAGATTAAGCTCGGTGTAAGTGCACCGAAGGAGGTGCCGATTTACCGCAAGGAGGTTTATACGCAGATACAGCAGG
AGAACAGGAAATCTGCGGATGCACAGAATGCACAGGCTCTCAAGGAGCTGTTTGGATAG

Upstream 100 bases:

>100_bases
AGCAACAAAGCAGCACAGCTTATAGTTGAGGATGACTACAAGGTGCACTTCCCGATTTATGACATCATAAAAGGGAAAAA
AGAAAGGGCGGGTGAATAGT

Downstream 100 bases:

>100_bases
CTTAAGACAGAGAGTTATATGTCGAAAGTTGCGACCGAAACCAATTGAATGAGAGTTCTATCAAGGCTATAATTGAACCA
GTACAGCGATATAACTTTTT

Product: putative carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MLALTRKKGESLVINNDIEITILEIRGDQIKLGVSAPKEVPIYRKEVYTQIQQENRKSADAQNAQALKELFG

Sequences:

>Translated_72_residues
MLALTRKKGESLVINNDIEITILEIRGDQIKLGVSAPKEVPIYRKEVYTQIQQENRKSADAQNAQALKELFG
>Mature_72_residues
MLALTRKKGESLVINNDIEITILEIRGDQIKLGVSAPKEVPIYRKEVYTQIQQENRKSADAQNAQALKELFG

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=60, Percent_Identity=43.3333333333333, Blast_Score=66, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_EUBR3 (C4Z9R8)

Other databases:

- EMBL:   CP001107
- RefSeq:   YP_002936050.1
- GeneID:   7965573
- GenomeReviews:   CP001107_GR
- KEGG:   ere:EUBREC_0111
- ProtClustDB:   CLSK2548220
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8126; Mature: 8126

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALTRKKGESLVINNDIEITILEIRGDQIKLGVSAPKEVPIYRKEVYTQIQQENRKSAD
CCCCCCCCCCEEEECCCCEEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC
AQNAQALKELFG
CHHHHHHHHHCC
>Mature Secondary Structure
MLALTRKKGESLVINNDIEITILEIRGDQIKLGVSAPKEVPIYRKEVYTQIQQENRKSAD
CCCCCCCCCCEEEECCCCEEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC
AQNAQALKELFG
CHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA