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The map label for this gene is ydcN [H]

Identifier: 238922527

GI number: 238922527

Start: 97085

End: 97654

Strand: Direct

Name: ydcN [H]

Synonym: EUBREC_0101

Alternate gene names: 238922527

Gene position: 97085-97654 (Clockwise)

Preceding gene: 238922526

Following gene: 238922529

Centisome position: 2.81

GC content: 47.37

Gene sequence:

>570_bases
ATGAGTATGGATTATCTGTCACACAATGTATCTGAAAATTTAAAAAGAATACGTCAGTCAAAGGGCATGAGCTTAGATCA
GGTAGCAGAGCAGACCGGTGTGAGTAAAAGCATGCTTGCTCAGATAGAAAAGGGCACAGCGAATCCATCTATCGGAGTGC
TTGGTAAAATCACAAGCGGTCTGCGAATTGAGTTTCAAAGACTTATAGATCCGCCAAGAGTGGACTATGCGCTCATATCT
CCGGATGATCTGGTCCCGACAAAGGAGCTTTTGGGACAGTACAGGGTATGGACCTGCTTCCCATACGAGGACTCAAGGGA
GGTTGAGGTATACCGTATCGATGTGGAGCCGGGCGGCGTGTATACAAGCGGTGGGCACGGCGAGAAAACACGCGAATATC
TTACAGTCACAGACGGTGTGCTAACGGTCGAGTGTCACGACCATGTGCAGGAAATCCATAGGGGACAGGTGTATAAGTTT
GAGACCGATCAGCCTCATTTGTATCGCAATGATGGTGATAGGGTGGCAAGCTGCATGTGCTTCTTTTTGGATTATACTAA
TATTCGGTGA

Upstream 100 bases:

>100_bases
AGTGGCAACATTGCTGTAAATCCAAGGGCTTCACGCCAGTGCGATATCGAGATGCTGTATCGCAAGGCACTGTAAACTTA
TAAAATACAAAAACGGAGAT

Downstream 100 bases:

>100_bases
GATTTTTAGCCTCTCCTCACCACAGCACTTTTCCCTCTAAAAGCAATACCGATGCTTATAATTGAATTCACACCATTATC
GCGCAGCTCTGTGTCGTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSMDYLSHNVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSGLRIEFQRLIDPPRVDYALIS
PDDLVPTKELLGQYRVWTCFPYEDSREVEVYRIDVEPGGVYTSGGHGEKTREYLTVTDGVLTVECHDHVQEIHRGQVYKF
ETDQPHLYRNDGDRVASCMCFFLDYTNIR

Sequences:

>Translated_189_residues
MSMDYLSHNVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSGLRIEFQRLIDPPRVDYALIS
PDDLVPTKELLGQYRVWTCFPYEDSREVEVYRIDVEPGGVYTSGGHGEKTREYLTVTDGVLTVECHDHVQEIHRGQVYKF
ETDQPHLYRNDGDRVASCMCFFLDYTNIR
>Mature_188_residues
SMDYLSHNVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSGLRIEFQRLIDPPRVDYALISP
DDLVPTKELLGQYRVWTCFPYEDSREVEVYRIDVEPGGVYTSGGHGEKTREYLTVTDGVLTVECHDHVQEIHRGQVYKFE
TDQPHLYRNDGDRVASCMCFFLDYTNIR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=172, Percent_Identity=32.5581395348837, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21510; Mature: 21378

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMDYLSHNVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSG
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECCCC
LRIEFQRLIDPPRVDYALISPDDLVPTKELLGQYRVWTCFPYEDSREVEVYRIDVEPGGV
CEEEHHHHCCCCCCCEEEECCCCCCCHHHHHCCEEEEEEECCCCCCCEEEEEEEECCCCE
YTSGGHGEKTREYLTVTDGVLTVECHDHVQEIHRGQVYKFETDQPHLYRNDGDRVASCMC
EECCCCCCCCCEEEEEECCEEEEEEHHHHHHHHCCCEEEEECCCCCEEECCCHHHHHHHH
FFLDYTNIR
HHHHHCCCC
>Mature Secondary Structure 
SMDYLSHNVSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSG
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECCCC
LRIEFQRLIDPPRVDYALISPDDLVPTKELLGQYRVWTCFPYEDSREVEVYRIDVEPGGV
CEEEHHHHCCCCCCCEEEECCCCCCCHHHHHCCEEEEEEECCCCCCCEEEEEEEECCCCE
YTSGGHGEKTREYLTVTDGVLTVECHDHVQEIHRGQVYKFETDQPHLYRNDGDRVASCMC
EECCCCCCCCCEEEEEECCEEEEEEHHHHHHHHCCCEEEEECCCCCEEECCCHHHHHHHH
FFLDYTNIR
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]