Click here to switch to the map view.

The map label for this gene is sdpR [H]

Identifier: 238922013

GI number: 238922013

Start: 204441

End: 204740

Strand: Reverse

Name: sdpR [H]

Synonym: EUBELI_20248

Alternate gene names: 238922013

Gene position: 204740-204441 (Counterclockwise)

Preceding gene: 238922014

Following gene: 238922012

Centisome position: 32.67

GC content: 30.0

Gene sequence:

>300_bases
ATGAATGAGAAAGAACTAACTTCTAGTTTTAAGGCTCTCTCTTGCGAAACTAGAAGAAAAATTATTTACCTTTTAAAAAG
TAAATGCTTATGTGCCGGAGATATAGCCAAACATTTTGAACTCACTGGAGCTACTATTTCACATCACTTAAAAGTATTAG
CAGAGGGAAATTTGATAACATCTAAAAAAGTGGGTTTAGAGATATACTATTCTCTCAACATTGAAAAATATAATGTATTG
AGTAGGTGGTTTCAATTTCTGAATGATATAGAAAATTTCAAAGAGAAAGGGATAAAATGA

Upstream 100 bases:

>100_bases
ACAAAACTTTGATGTATTAGAAAAAATATTTTTTGACAAATGTGTAATAAAAAAATAAATTTAATGACTTAGTGCTAGAA
TACTGGGAGAATTTTATGAA

Downstream 100 bases:

>100_bases
ACACTCCAAAATATCTAGAAATTGCAGAATTGCTTAGAATAGATATATTTGTAAAACATGCAAAAGAAAATCAACTAATT
CCCGGTATCAGAAGATACGC

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MNEKELTSSFKALSCETRRKIIYLLKSKCLCAGDIAKHFELTGATISHHLKVLAEGNLITSKKVGLEIYYSLNIEKYNVL
SRWFQFLNDIENFKEKGIK

Sequences:

>Translated_99_residues
MNEKELTSSFKALSCETRRKIIYLLKSKCLCAGDIAKHFELTGATISHHLKVLAEGNLITSKKVGLEIYYSLNIEKYNVL
SRWFQFLNDIENFKEKGIK
>Mature_99_residues
MNEKELTSSFKALSCETRRKIIYLLKSKCLCAGDIAKHFELTGATISHHLKVLAEGNLITSKKVGLEIYYSLNIEKYNVL
SRWFQFLNDIENFKEKGIK

Specific function: Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 11414; Mature: 11414

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00846 HTH_ARSR_1 ; PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKELTSSFKALSCETRRKIIYLLKSKCLCAGDIAKHFELTGATISHHLKVLAEGNLIT
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHEECCCEEE
SKKVGLEIYYSLNIEKYNVLSRWFQFLNDIENFKEKGIK
CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNEKELTSSFKALSCETRRKIIYLLKSKCLCAGDIAKHFELTGATISHHLKVLAEGNLIT
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHEECCCEEE
SKKVGLEIYYSLNIEKYNVLSRWFQFLNDIENFKEKGIK
CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]