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The map label for this gene is lagD [H]

Identifier: 238922001

GI number: 238922001

Start: 195467

End: 195814

Strand: Reverse

Name: lagD [H]

Synonym: EUBELI_20236

Alternate gene names: 238922001

Gene position: 195814-195467 (Counterclockwise)

Preceding gene: 238922002

Following gene: 238922000

Centisome position: 31.24

GC content: 35.92

Gene sequence:

>348_bases
ATGATGAGATATTATTGTATAAAACAGCACGACATTACTGATTGTGGTGTCGCATGTCTTGCGACCATTTGTAAACAGAA
TGGTTACAAGATAGGTATTACCCAGATTCGTGAAGTTGCAGGAACAGATAAACAGGGAACTAATGCATATGGTGTAATTA
AAGCAGCAGAGCACTTGGGTTTTAGTGCAAAGGGAGTAAAAGGGAATAAGGAATCATTCTTTTCAGAGTTTCCCTTGCTC
TGCATTGCTGTTGAATGCCCCTCCAAAAATGGTGTATCTTCAACTTTCATGAACAGAATAATGAAGACAATAAATAAATC
AAATTTAAGTGGAAAATATATAAGATAG

Upstream 100 bases:

>100_bases
AGTATATTTGTTATTGTAAATTTAGTGTTGAGTATTTTTATGGCTTGGCTAATGTTAGTAATAGGATGATGCGTTGTTAT
AAAAATAGAAAATAGAGGAA

Downstream 100 bases:

>100_bases
TAAAATGTTACTCCCGTTTCTTTTGTTTTTCTCCCAAAATATATTATAATTGGTAGAAAAATGTAACGTTTGGGAGAAAC
ACGCAACAAAAACTGGAAAG

Product: ATP-binding cassette subfamily B protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MMRYYCIKQHDITDCGVACLATICKQNGYKIGITQIREVAGTDKQGTNAYGVIKAAEHLGFSAKGVKGNKESFFSEFPLL
CIAVECPSKNGVSSTFMNRIMKTINKSNLSGKYIR

Sequences:

>Translated_115_residues
MMRYYCIKQHDITDCGVACLATICKQNGYKIGITQIREVAGTDKQGTNAYGVIKAAEHLGFSAKGVKGNKESFFSEFPLL
CIAVECPSKNGVSSTFMNRIMKTINKSNLSGKYIR
>Mature_115_residues
MMRYYCIKQHDITDCGVACLATICKQNGYKIGITQIREVAGTDKQGTNAYGVIKAAEHLGFSAKGVKGNKESFFSEFPLL
CIAVECPSKNGVSSTFMNRIMKTINKSNLSGKYIR

Specific function: LagD (TC 3.A.1) is involved in processing the signal peptide and probably also in export of the bacteriocin lactococcin G [H]

COG id: COG2274

COG function: function code V; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 peptidase C39 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR001140
- InterPro:   IPR011527
- InterPro:   IPR003593
- InterPro:   IPR005897
- InterPro:   IPR005074 [H]

Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran; PF03412 Peptidase_C39 [H]

EC number: NA

Molecular weight: Translated: 12653; Mature: 12653

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
8.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRYYCIKQHDITDCGVACLATICKQNGYKIGITQIREVAGTDKQGTNAYGVIKAAEHLG
CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCHHHHHHHHHCC
FSAKGVKGNKESFFSEFPLLCIAVECPSKNGVSSTFMNRIMKTINKSNLSGKYIR
CCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MMRYYCIKQHDITDCGVACLATICKQNGYKIGITQIREVAGTDKQGTNAYGVIKAAEHLG
CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCHHHHHHHHHCC
FSAKGVKGNKESFFSEFPLLCIAVECPSKNGVSSTFMNRIMKTINKSNLSGKYIR
CCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7565085 [H]